#gi	CAI	CAI_Alm	CBI	COG	COGanno	COGfun	Annotation
181994	1.33519194957742	2.92113037474619	1.00809796489229	2419	Uncharacterized conserved protein	S	conserved hypothetical protein
181995	1.44241915955679	3.05499917481518	1.03046102700576	-	-	-	paREP1
181996	1.37721862091632	3.0278304492572	1.03384332572549	2355	Zn-dependent dipeptidase, microsomal dipeptidase homolog	E	peptidase, putative
181997	1.5647074449032	3.53370244909312	1.15598617805491	4938	Uncharacterized conserved protein	S	conserved within P. aerophilum
181998	1.67262032785939	3.54864908433529	0.965676635904364	-	-	-	hypothetical protein
181999	1.53606390740238	3.27735435101771	1.14316287681528	-	-	-	hypothetical protein
182000	1.31740565584327	2.85890182080463	1.00535598036053	602	Organic radical activating enzymes	O	coenzyme PQQ synthesis protein, conjectural
182001	1.51141652607887	3.21953695808632	1.05163699092215	-	-	-	conserved hypothetical protein
182002	1.42963125841672	3.23608744210446	1.10696594726879	1695	Predicted transcriptional regulators	K	conserved hypothetical protein
182003	1.47364233664149	3.14822893521183	1.07046291870862	-	-	-	hypothetical protein
182004	1.42504046425246	3.50069377796389	1.13672228219305	-	-	-	hypothetical protein
182005	1.51415289080028	3.3340567405998	1.15822413898978	-	-	-	hypothetical protein
182006	1.38325177015393	3.17654107297241	1.04655403166697	4933	Uncharacterized conserved protein	S	conserved hypothetical protein
182007	1.3977448471193	3.04704341244076	1.06641460940627	2005	N-terminal domain of molybdenum-binding protein	R	conserved hypothetical protein
182008	1.41474134290257	3.21078512341844	1.10595890888361	2998	ABC-type tungstate transport system, permease component	H	binding protein, putative
182009	1.42469311799535	3.48237459001877	1.20691530109515	4662	ABC-type tungstate transport system, periplasmic component	H	sulfate transport system, permease protein, putative
182010	1.30011048686407	2.90875627925205	0.973135762247192	3839	ABC-type sugar transport systems, ATPase components	G	sulfate transport system, ATP-binding protein, putative
182011	1.35446526000857	3.00384593258392	1.02049278920476	1028	Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)	IQR	short chain dehydrogenase
182012	1.46690664243649	3.00900523934261	1.05004255773938	-	-	-	conserved hypothetical protein
182013	1.48288133878902	3.26271064824771	1.10437096920974	1708	Predicted nucleotidyltransferases	R	paREP11
182014	1.3546196659265	2.9380372629931	1.01012997515987	1530	Ribonucleases G and E	J	conserved hypothetical protein
182015	1.36453151980543	3.08327692310937	1.0663113762439	-	-	-	hypothetical protein
182016	1.42880023446669	3.23400171216008	1.04238313990731	1487	Predicted nucleic acid-binding protein, contains PIN domain	R	conserved hypothetical protein
182017	1.46666281471362	3.20933226353111	1.08157791894095	83	Homoserine kinase	E	homoserine kinase
182018	1.37683814010491	2.99089630430494	1.01235339263562	1878	Predicted metal-dependent hydrolase	R	conserved hypothetical protein
182019	1.49493724078191	3.6184367314282	1.21341421996436	577	ABC-type antimicrobial peptide transport system, permease component	V	conserved hypothetical protein
182020	1.4518041903221	3.301685654621	1.1585958253286	-	-	-	conserved within P. aerophilum
182021	1.42584434498767	3.43107402353972	1.18451749267241	-	-	-	hypothetical protein
182022	1.33478885138498	3.00882638923004	1.04662747709585	1215	Glycosyltransferases, probably involved in cell wall biogenesis	M	egghead homolog
182023	1.45436733406216	3.11797055883676	1.04285337995959	2250	Uncharacterized conserved protein related to C-terminal domain of eukaryotic chaperone, SACSIN	S	conserved hypothetical protein
182024	1.49059340315586	3.20301268655115	1.0832089615022	1708	Predicted nucleotidyltransferases	R	hypothetical protein
182025	1.58657395014447	3.31682566432856	1.03996235509257	-	-	-	hypothetical protein
182026	1.40506407777183	3.10477075399578	1.06711922257445	-	-	-	hypothetical protein
182027	1.43633037999457	3.10875019980889	1.06719674712692	4826	Serine protease inhibitor	O	serine protease inhibitor (serpin)
182028	1.52475455691366	3.4355184158367	1.1404116905396	-	-	-	hypothetical protein
182029	1.47486595174043	3.43508836534769	1.08007015764805	-	-	-	hypothetical protein
182030	1.35792226331215	3.04482291922712	1.07503853297274	1409	Predicted phosphohydrolases	R	hypothetical protein
182031	1.34938515705698	3.10136531511789	1.14383729525747	-	-	-	hypothetical protein
182032	1.41031220114251	3.18746615887626	1.10730699766894	-	-	-	conserved hypothetical protein
182033	1.33815790566625	3.02858130398723	1.07915842953913	1840	ABC-type Fe3+ transport system, periplasmic component	P	extracellular solute binding protein, conjectural
182034	1.30981298306062	3.15658003068634	1.11227594116459	1178	ABC-type Fe3+ transport system, permease component	P	molybdenum transport system permease protein, putative
182035	1.37622358679591	2.9899441215745	1.01455613575596	3839	ABC-type sugar transport systems, ATPase components	G	transporter ATP-binding protein, putative
182036	1.32222964816988	2.89743807403634	0.993335806255997	5257	Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase)	J	translation initiation factor aIF-2 gamma subunit, putative
182037	1.29917262755272	3.33720100147104	1.19039109900425	-	-	-	hypothetical protein
182038	1.52047871940889	3.64149730713801	1.14379958012165	-	-	-	hypothetical protein
182039	1.52022297697334	3.36232218502827	1.10498814111373	2254	Predicted HD superfamily hydrolase, possibly a nuclease	L	conserved hypothetical protein
182040	1.52973434000805	3.35105426654019	1.10631375471783	1203	Predicted helicases	R	helicase, probable
182041	1.57973466888547	3.35259337556993	1.05942239487754	-	-	-	hypothetical protein
182042	1.35163512310624	2.812378167332	0.956083922408742	-	-	-	hypothetical protein
182043	1.29108414638181	2.78750151679336	1.01349735322121	-	-	-	hypothetical protein
182044	1.35691321107136	3.1178653505032	1.08288141354042	5551	Uncharacterized conserved protein	S	conserved hypothetical protein
182045	1.32690723861199	3.02365771531124	1.01624406871532	-	-	-	hypothetical protein
182046	1.47823209692083	3.44742900049064	1.08300721606814	-	-	-	paREP9, associated with SRSRs
182047	1.34656474318954	2.92731433442727	1.00089369196387	1468	RecB family exonuclease	L	conserved hypothetical protein
182048	1.4046245212677	3.11867935203384	1.06477416799204	1343	Uncharacterized protein predicted to be involved in DNA repair	L	conserved hypothetical protein
182049	1.34341150775062	2.96998119517586	1.02197309233094	1518	Uncharacterized protein predicted to be involved in DNA repair	L	conserved hypothetical protein
182050	1.44018441438125	3.16770628237615	1.09012569131918	4343	Uncharacterized protein conserved in archaea	S	conserved hypothetical protein
182051	1.27133360303699	2.84364181897446	1.04275131030937	-	-	-	hypothetical protein
182052	1.24470625479075	2.78054111787341	0.984771908342501	-	-	-	hypothetical protein
182053	1.48058746987057	3.49565544320186	1.15310618086059	-	-	-	hypothetical protein
182054	1.37296057817466	3.02846152323971	1.02039527034863	3864	Uncharacterized protein conserved in bacteria	S	hypothetical protein
182055	1.49528319268884	3.56651535805811	1.15533303081739	-	-	-	hypothetical protein
182056	1.31281745098072	2.96551098800831	1.00048353098474	714	MoxR-like ATPases	R	conserved hypothetical protein
182057	1.37694631959807	2.97880901780623	1.03636528015797	-	-	-	hypothetical protein
182058	1.48243907850159	3.37133591561592	1.10769398392999	-	-	-	paREP1
182059	1.64224679419771	3.59992674296751	1.02434529656908	-	-	-	hypothetical protein
182060	1.45140827938037	3.27675401353554	1.12547050926628	4938	Uncharacterized conserved protein	S	hypothetical protein
182061	1.49428324706334	3.03371598423277	1.00159008955418	2002	Regulators of stationary/sporulation gene expression	K	conserved hypothetical protein
182062	1.46636220663368	3.17081226286369	1.05780145130817	1848	Predicted nucleic acid-binding protein, contains PIN domain	R	hypothetical protein
182063	1.43399748298745	3.10445766903413	1.08243544517784	-	-	-	hypothetical protein
182064	1.59547019719853	3.49090621411485	1.05500151337404	-	-	-	hypothetical protein
182065	1.57612926834353	3.53312825589576	0.952635192511904	-	-	-	hypothetical protein
182066	1.3601917784829	3.08113226476265	1.05698253901107	-	-	-	hypothetical protein
182067	1.39741125528463	3.06972031966777	1.0825218515387	1353	Predicted hydrolase of the HD superfamily (permuted catalytic motifs)	R	conserved hypothetical protein
182068	1.41291066088244	3.15254717324949	1.0912485769744	-	-	-	hypothetical protein
182069	1.36929109798231	3.03822858592565	1.02310581487858	-	-	-	hypothetical protein
182070	1.36582722620389	3.02019491082196	1.03012259328926	1337	Uncharacterized protein predicted to be involved in DNA repair (RAMP superfamily)	L	conserved hypothetical protein
182071	1.45486346614779	3.09788078061522	1.08281155318261	-	-	-	hypothetical protein
182072	1.35258811320059	2.93185128327306	1.00350762120147	-	-	-	hypothetical protein
182073	1.34063594160791	2.97267186511106	0.994413532321121	1517	Uncharacterized protein predicted to be involved in DNA repair	L	hypothetical protein
182074	1.33381906141508	2.77305777351593	0.995577149095233	-	-	-	hypothetical protein
182075	1.37677312268433	3.02480085391074	1.03373490301301	1517	Uncharacterized protein predicted to be involved in DNA repair	L	hypothetical protein
182076	1.36726726885356	2.9102377879117	0.972122282560651	-	-	-	hypothetical protein
182077	1.49798659448268	3.35322584786175	1.1364624130329	1517	Uncharacterized protein predicted to be involved in DNA repair	L	hypothetical protein
182078	1.39952524997429	3.1330008503414	1.03341080221276	-	-	-	hypothetical protein
182079	1.41713442023562	3.03622707464014	1.00250469732018	-	-	-	hypothetical protein
182080	1.37937826678501	3.11008349760722	1.03646243651838	4006	Uncharacterized protein conserved in archaea	S	conserved hypothetical protein
182081	1.34802088191813	3.02639469630241	1.01972979668437	433	Predicted ATPase	R	conserved hypothetical protein
182082	1.34539274209461	3.0020898229848	1.00654809395687	5551	Uncharacterized conserved protein	S	conserved hypothetical protein
182083	1.25850800669254	2.78374260710633	1.00403055522125	5551	Uncharacterized conserved protein	S	hypothetical protein
182084	1.47661226439855	3.7515792996511	1.17480568691611	-	-	-	hypothetical protein
182085	1.38151913574175	3.28438286083807	1.14008808833007	-	-	-	hypothetical protein
182086	1.43251781438084	3.63910684614148	1.14418164483387	-	-	-	hypothetical protein
182087	1.4979237918479	3.52108207724626	1.10346445246671	-	-	-	hypothetical protein
182088	1.62991389119669	3.57213560488707	1.0607534423789	-	-	-	hypothetical protein
182089	1.58846845774252	3.62383588131022	1.14316085593781	-	-	-	hypothetical protein
182090	1.42700566476961	3.24217772591716	1.07968397388057	-	-	-	hypothetical protein
182091	1.55085367971839	3.49877091960771	1.12099184987502	-	-	-	paREP5a
182092	1.56377959020856	3.42165897717051	0.97268827782609	-	-	-	paREP5b
182093	1.45055688692929	2.95618193652649	0.977568894237335	2105	Uncharacterized conserved protein	S	conserved hypothetical protein
182094	1.34196592471424	3.1201935384934	1.06127573195356	2512	Uncharacterized membrane-associated protein/domain	S	conserved protein
182095	1.34566208606355	2.89326332141679	0.98773819729468	-	-	-	hypothetical protein
182096	1.4848977784606	3.51193755125078	1.19448808258783	-	-	-	hypothetical protein
182097	1.35921672922762	3.03584134003741	1.0350597008755	4113	Predicted nucleic acid-binding protein, contains PIN domain	R	conserved hypothetical protein
182098	1.44962917597933	3.13157425585856	1.07240423508023	-	-	-	conserved hypothetical protein
182099	1.38955667059368	3.06513357187959	1.06332817582981	1192	ATPases involved in chromosome partitioning	D	hypothetical protein
182100	1.48962725953593	3.0960564256985	1.05275177764316	-	-	-	hypothetical protein
182101	1.30248707254526	2.79207165502249	1.10981489959098	-	-	-	hypothetical protein
182102	1.34254112705942	3.06454977949434	1.04353081782336	-	-	-	hypothetical protein
182103	1.42863155564436	3.32067503029114	1.10236832332206	-	-	-	hypothetical protein
182104	1.32205103485043	2.91410513201132	1.00546999023175	494	NTP pyrophosphohydrolases including oxidative damage repair enzymes	LR	mutT/nudix family protein
182105	1.31915276166766	2.83728198486775	0.948640274938118	731	Fe-S oxidoreductases	C	conserved hypothetical protein
182106	1.25313403733138	2.6205326620762	1.14018274487816	-	-	-	hypothetical protein
182107	1.52527765220596	3.5920112783832	1.17219567523412	2445	Uncharacterized conserved protein	S	conserved hypothetical protein
182108	1.37182260290621	3.08178057401313	1.07691919686714	1708	Predicted nucleotidyltransferases	R	paREP11
182109	1.36406955458886	2.89504180771653	1.02745577217751	1708	Predicted nucleotidyltransferases	R	hypothetical protein
182110	1.34683778445829	3.01392795626423	1.03342382943577	2250	Uncharacterized conserved protein related to C-terminal domain of eukaryotic chaperone, SACSIN	S	conserved hypothetical protein
182111	1.32682751690798	2.96368642436221	0.978225106781357	819	Putative transcription activator	K	conserved protein (tenA homolog)
182112	1.33464852790472	2.9304996925266	1.00659016424869	-	-	-	conserved hypothetical protein
182113	1.35658243108743	3.07312179966429	1.05948630427751	1373	Predicted ATPase (AAA+ superfamily)	R	conserved hypothetical protein
182114	1.29904684383801	2.77156638525676	1.02159410929504	-	-	-	ribosomal protein L24, conjectural
182115	1.40842345269898	3.03092302762967	1.04190227483179	1635	Flavoprotein involved in thiazole biosynthesis	H	thiamine biosynthetic enzyme (thi1)
182116	1.30387239211546	3.1107139808935	1.04522928124021	477	Permeases of the major facilitator superfamily	GEPR	metabolite transport protein
182117	1.34726152093189	3.06993193673819	1.00382484845174	-	-	-	P. aerophilum family 562 protein
182118	1.33265003985923	2.85885789222605	0.951173078870067	-	-	-	P. aerophilum family 577 protein
182119	1.30266945842968	3.06702228804148	0.989038593892102	5551	Uncharacterized conserved protein	S	conserved hypothetical protein
182120	1.31579919357403	2.78524465863469	0.875126256520436	1468	RecB family exonuclease	L	conserved hypothetical protein
182121	1.44965876259095	3.06247452485761	1.04534623481524	1343	Uncharacterized protein predicted to be involved in DNA repair	L	conserved hypothetical protein
182122	1.30547246265781	2.92375642774074	1.00074638929275	1518	Uncharacterized protein predicted to be involved in DNA repair	L	conserved hypothetical protein
182123	1.39776492085783	3.02269277742927	1.02036978718477	4343	Uncharacterized protein conserved in archaea	S	conserved hypothetical protein
182124	1.61943922580128	3.72018414481892	1.19631606917256	640	Predicted transcriptional regulators	K	conserved hypothetical protein
182125	1.63278261674242	3.67694637731227	1.11253788023142	-	-	-	hypothetical protein
182126	1.47610704105427	3.30134705847229	1.10325033483517	-	-	-	conserved hypothetical protein
182127	1.50670438680556	3.22356948582639	1.09760557193323	2254	Predicted HD superfamily hydrolase, possibly a nuclease	L	conserved hypothetical protein
182128	1.55301460879335	3.39891320483489	1.14346349286334	1203	Predicted helicases	R	helicase, probable
182129	1.50960440118582	3.32486617492713	1.12356901535725	1688	Uncharacterized protein predicted to be involved in DNA repair (RAMP superfamily)	L	hypothetical protein
182130	1.46254922208723	3.13634491858236	1.07326466656497	1857	Uncharacterized protein predicted to be involved in DNA repair	L	conserved hypothetical protein
182131	1.55831406499769	3.35161524813703	1.08978683175902	-	-	-	conserved hypothetical protein
182132	1.48091995185505	3.38392889670101	1.11121342860588	5551	Uncharacterized conserved protein	S	conserved within P. aerophilum
182133	1.37888397355509	3.00290656672959	1.06199504760369	1672	Predicted ATPase (AAA+ superfamily)	R	hypothetical protein
182134	1.32801180057157	3.1704882757894	1.05720857078376	-	-	-	hypothetical protein
182135	1.35398578018135	2.8777648920475	1.01225790073313	152	Phosphoribosylaminoimidazolesuccinocarboxamide (SAICAR) synthase	F	phosphoribosylaminoimidazole-succinocarboxamide synthase (purC)
182136	1.31250737395828	2.7725116021734	0.97050736270105	151	Phosphoribosylamine-glycine ligase	F	phosphoribosylglycinamide synthetase (GARS) (purD)
182137	1.35693630103176	2.95126169852671	1.01140794070114	34	Glutamine phosphoribosylpyrophosphate amidotransferase	F	amidophosphoribosyltransferase (purF)
182138	1.3656193108706	2.88609852929939	0.980330834576245	299	Folate-dependent phosphoribosylglycinamide formyltransferase PurN	F	phosphoribosylglycinamide formyltransferase
182139	1.34033509233425	2.97743662594028	1.02806859563518	190	5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase	H	methylenetetrahydrofolate dehydrogenase (folD)
182140	1.37583013589873	2.97520261284499	0.98835668012883	150	Phosphoribosylaminoimidazole (AIR) synthetase	F	phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (purM)
182141	1.32438883972373	2.81867738592053	0.976514628768035	47	Phosphoribosylformylglycinamidine (FGAM) synthase, glutamine amidotransferase domain	F	phosphoribosylformylglycinamidine synthase I (FGAM synthase I) (purQ)
182142	1.32544354728755	2.94934076946828	1.05506182438202	1828	Phosphoribosylformylglycinamidine (FGAM) synthase, PurS component	F	conserved hypothetical protein
182143	1.35362804015026	2.97428816026451	1.04740487748042	46	Phosphoribosylformylglycinamidine (FGAM) synthase, synthetase domain	F	phosphoribosylformylglycinamidine synthase II (FGAM synthase II) (purL)
182144	1.35355493345621	2.92581584128184	0.994915779192168	34	Glutamine phosphoribosylpyrophosphate amidotransferase	F	amidophosphoribosyltransferase (purF)
182145	1.34802011742026	3.03827881095571	0.986246140187707	-	-	-	conserved within P. aerophilum, authentic frameshift
182146	1.40899158078566	3.07692275282889	1.11792637644164	-	-	-	hypothetical protein
182147	1.25721114886192	2.7525880044622	0.908778043147365	-	-	-	paREP8
182148	1.33354730735584	2.87577265794586	0.926734803891504	26	Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase)	F	phosphoribosylaminoimidazole carboxylase ATPase subunit (AIRC) (purK)
182149	1.52767882583477	3.96712442746631	1.15342532619405	-	-	-	hypothetical protein
182150	1.58800816223656	3.92172817707452	1.17394821280285	-	-	-	hypothetical protein
182151	1.33677346743635	2.8420863224443	0.979708177877504	1673	Uncharacterized protein conserved in archaea	S	conserved hypothetical protein
182152	1.29954044087148	2.67496274759224	1.00685838797819	-	-	-	conserved within P. aerophilum
182153	1.46626606937839	3.18490054570477	1.10259900732419	1002	Type II restriction enzyme, methylase subunits	V	hypothetical protein
182154	1.27569889718071	2.79636724187848	0.947511741786198	4930	Predicted ATP-dependent Lon-type protease	O	hypothetical protein
182155	1.41088430102779	3.160822815437	1.07891364711323	433	Predicted ATPase	R	conserved hypothetical protein
182156	1.41308710160594	3.09482145480316	1.05380329351949	-	-	-	conserved hypothetical protein
182157	1.61723523881506	3.61992815933271	1.14179564686714	-	-	-	hypothetical protein
182158	1.3799351801413	3.03284686429767	1.01641947009459	-	-	-	hypothetical protein
182159	1.28815323319741	2.85380013570297	0.954461199601902	41	Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase	F	phosphoribosylaminoimidazole carboxylase catalytic subunit (AIRC) (purE)
182160	1.27291857066515	2.70261250546713	0.967990065691573	494	NTP pyrophosphohydrolases including oxidative damage repair enzymes	LR	diadenosine 5'5'''-P1,P4-tetraphosphate pyrophosphohydrolase (mutT/nudix family protein)
182161	1.63105899502006	3.68678816064605	1.14536449149943	-	-	-	P. aerophilum family 562 protein, associated with P. aerophilum family 577, degenerate
182162	1.35344325095957	2.96706661959099	1.01578820126471	-	-	-	P. aerophilum family 577 protein, associated with P. aerophilum family 562, degenerate
182163	1.55988004958577	3.5994955656764	1.09544396071354	-	-	-	hypothetical protein
182164	1.41421702609437	3.11019021035847	1.06977274802279	1350	Predicted alternative tryptophan synthase beta-subunit (paralog of TrpB)	R	tryptophan synthase beta subunit (trpB), authentic frameshift
182165	1.3726500338617	3.07449327736392	1.02309322557612	2263	Predicted RNA methylase	J	methylase, conjectural
182166	1.33841155027947	2.96796957843197	1.04359907908003	330	Membrane protease subunits, stomatin/prohibitin homologs	O	prohibitin homolog (hflK family)
182167	1.39166841427217	3.29436198773524	1.13352694237008	-	-	-	hypothetical protein
182168	1.32445822551279	2.91621639023615	0.999746081751587	681	Signal peptidase I	U	signal peptidase
182169	1.50198461632289	3.14866398902071	1.04851928293047	-	-	-	hypothetical protein
182170	1.42066012133212	2.95897478621467	1.01663752316259	693	Putative intracellular protease/amidase	R	intracellular protease
182171	1.4253647265865	3.66601580822164	1.18011569617186	-	-	-	hypothetical protein
182172	1.40568181471729	3.07515020028307	1.06096697865076	1131	ABC-type multidrug transport system, ATPase component	V	ABC-2 type transport system ATP-binding protein
182173	1.3418284261066	3.19968734500963	1.097552644759	842	ABC-type multidrug transport system, permease component	V	membrane protein
182174	1.34866078294532	2.8713887303079	0.994843358939887	2146	Ferredoxin subunits of nitrite reductase and ring-hydroxylating dioxygenases	PR	Rieske iron sulfur protein, putative
182175	1.4688096148037	3.15501540193035	1.07876075695995	1708	Predicted nucleotidyltransferases	R	conserved hypothetical protein
182176	1.28945731312031	2.70295157648489	0.879642421177985	605	Superoxide dismutase	P	superoxide dismutase (sod)
182177	1.44994607326371	3.27419756021404	1.13071225345302	-	-	-	conserved within P. aerophilum
182178	1.3018326954899	2.9600683672712	1.06749423703139	-	-	-	hypothetical protein
182179	1.46818336075981	3.25991732853004	1.12177765547376	-	-	-	hypothetical protein
182180	1.56455461129341	3.48986027380582	1.12152406904178	-	-	-	hypothetical protein
182181	1.46886958648727	3.6891997969854	1.15310289439931	-	-	-	P. aerophilum family 70 protein,
182182	1.42624725316331	3.20603079578836	1.141018036634	-	-	-	P. aerophilum family 68 protein
182183	1.24142529746851	2.57119925943726	0.860579656015961	2835	Uncharacterized conserved protein	S	conserved hypothetical protein
182184	1.33595850669849	3.04515882827753	1.05480742693465	4113	Predicted nucleic acid-binding protein, contains PIN domain	R	conserved hypothetical protein
182185	1.66375300909999	3.53669966148129	1.13683644108487	-	-	-	paREP2b
182186	1.34680463139201	3.46952944478942	1.12560837089723	-	-	-	conserved within P. aerophilum
182187	1.72861138991482	3.78498671176849	1.10574633934964	535	Predicted Fe-S oxidoreductases	R	metallo cofactor biosynthesis protein, conjectural
182188	1.56931373136224	3.46566332898353	1.0367159021392	-	-	-	hypothetical protein
182189	1.79761267978048	3.73450998164027	1.03378249280862	-	-	-	hypothetical protein
182190	1.51865331584839	3.41308357302404	1.11254287176508	-	-	-	P. aerophilum family 321 protein
182191	1.41341651906438	3.35376777908337	1.14975626454025	1266	Predicted metal-dependent membrane protease	R	P. aerophilum family 322 protein
182192	1.66434369915024	4.07708372349483	1.21350684038963	-	-	-	hypothetical protein
182193	1.57648665028522	2.95779998655134	1.05032348624971	-	-	-	hypothetical protein
182194	1.52642638126538	3.34276524218449	1.1044466114199	-	-	-	helix-turn-helix protein, conjectural
182195	1.35325869623494	3.04857490583331	1.07449856934918	343	Queuine/archaeosine tRNA-ribosyltransferase	J	conserved hypothetical protein
182196	1.47443157722211	2.99525041183171	1.0029450028817	-	-	-	paREP2a
182197	1.45882185005545	3.1347881440809	1.07878547738983	-	-	-	paREP2b
182198	1.42211754789309	3.17310056276982	1.04913035789896	-	-	-	hypothetical protein
182199	1.40032056132484	3.12463153480029	1.03098171334297	-	-	-	paREP1
182200	1.54122586677036	3.44123148565993	1.16967073100361	-	-	-	hypothetical protein
182201	1.39622397878413	3.01303506275064	1.09010313513281	-	-	-	hypothetical protein
182202	1.23452012635859	2.87335728486929	0.986091411055272	640	Predicted transcriptional regulators	K	conserved hypothetical protein
182203	1.52597698826332	3.29488716333706	1.15996638877722	-	-	-	conserved within P. aerophilum
182204	1.56010918255227	3.4858768037994	1.12960160939708	-	-	-	hypothetical protein
182205	1.3804287981683	2.94185428832999	1.00700358021077	402	Cytosine deaminase and related metal-dependent hydrolases	FR	chlorohydrolase, conjectural
182206	1.63338297749201	3.48613261918788	1.0582949982716	-	-	-	hypothetical protein
182207	1.60484311774745	3.41779039118853	1.09213278187488	-	-	-	conserved within P. aerophilum
182208	1.37787673300344	3.71139756978564	1.14435521115237	-	-	-	hypothetical protein
182209	1.47358601984587	3.52403621568377	1.15007754800178	-	-	-	hypothetical protein
182210	1.46663240981434	3.29177602637607	1.10060725731084	1131	ABC-type multidrug transport system, ATPase component	V	ABC-2 type transport system ATP-binding protein
182211	1.37349259032269	3.43826799042643	1.17294680352314	842	ABC-type multidrug transport system, permease component	V	ABC-2 type transport system, membrane protein
182212	1.37831062258273	2.96454548099516	1.01256679584201	780	Enzyme related to GTP cyclohydrolase I	R	GTP cyclohydrolase I, conjectural
182213	1.44353040675788	3.11147744701176	1.08828153904095	366	Glycosidases	G	hypothetical protein
182214	1.4092232558971	3.06278356176069	1.07474221354193	467	RecA-superfamily ATPases implicated in signal transduction	T	P. aerophilum family 417, putative ATP binding
182215	1.3714466462989	2.98763595097936	1.04865645826798	44	Dihydroorotase and related cyclic amidohydrolases	F	dihydroorotase (pyrC)
182216	1.50493282544141	3.73153938885393	1.23252152935968	370	Fe2+ transport system protein B	P	iron (II) transporter (feoB-2) part 1, conjectural, authentic frameshift
182217	1.42418524884322	3.13178370377745	1.08096300207508	370	Fe2+ transport system protein B	P	iron (II) transporter (feoB-2) part 2, conjectural, authentic frameshift
182218	1.50180810677826	3.37173558432076	1.1388806280189	3839	ABC-type sugar transport systems, ATPase components	G	thiamine transport ATP-binding protein
182219	1.39254851824535	3.46176142645382	1.20707448806678	1178	ABC-type Fe3+ transport system, permease component	P	conserved hypothetical protein
182220	1.40605172940447	3.15290694260319	1.06757446940376	4143	ABC-type thiamine transport system, periplasmic component	H	thiamine-binding periplasmic protein
182221	1.35229788805646	2.94050493450912	1.03334249146617	480	Translation elongation factors (GTPases)	J	translation elongation factor aEF-2
182222	1.37178806377107	2.9184658927759	1.0510955999638	422	Thiamine biosynthesis protein ThiC	H	thiamine biosynthesis protein (thiC)
182223	1.32250100453986	3.11085763810611	1.05548321499635	-	-	-	hypothetical protein
182224	1.49353360472424	3.42419959163405	1.11127135736613	4113	Predicted nucleic acid-binding protein, contains PIN domain	R	conserved hypothetical protein
182225	1.47660543866324	3.35399667253387	1.06266216879501	-	-	-	hypothetical protein
182226	1.46203580761446	3.26565478644209	1.11828081388439	2073	Cobalamin biosynthesis protein CbiG	H	cobalamin biosynthesis protein G (cbiG)
182227	1.51753842866811	3.39353012154988	1.09885205611183	2241	Precorrin-6B methylase 1	H	cobalamin biosynthesis precorrin-6Y methylase (cbiE)
182228	1.45704336694106	3.54171421398875	1.14771743682172	-	-	-	hypothetical protein
182229	1.40522887356196	3.46635721779255	1.13124103220435	-	-	-	hypothetical protein
182230	1.52634609032859	3.3449878431226	1.13200330738224	2082	Precorrin isomerase	H	cobalamin biosynthesis putative precorrin-8X methylmutase (precorrin isomerase)
182231	1.56832025636216	3.456339350928	1.14544394540307	1010	Precorrin-3B methylase	H	cobalamin biosynthesis precorrin-3 methylase (cbiF)
182232	1.40849898823037	3.05068864044806	1.05364034615017	1903	Cobalamin biosynthesis protein CbiD	H	cobalamin biosynthesis protein D (cbiD)
182233	1.4489557477093	3.27764165917697	1.12920174830419	2242	Precorrin-6B methylase 2	H	cobalamin biosynthesis precorrin-8W decarboxylase (cbiT)
182234	1.47241871141586	3.36087922256317	1.11344500651259	2243	Precorrin-2 methylase	H	cobalamin biosynthesis precorrin-3 methylase (cbiF)
182235	1.29620119673775	2.80993596931039	0.98930703337633	2875	Precorrin-4 methylase	H	cobalamin biosynthesis precorrin-3 methylase (cbiF)
182236	1.54624709338299	3.5603381270802	1.07075111816661	-	-	-	hypothetical protein
182237	1.53963991862283	3.91028216845333	1.19294225855812	-	-	-	hypothetical protein
182238	1.44856799875276	3.12150732214287	1.05664703940149	5493	Uncharacterized conserved protein containing a coiled-coil domain	S	conserved hypothetical protein
182239	1.46775237772851	3.19403136643446	1.07204534911383	-	-	-	P. aerophilum family 1964 protein
182240	1.43707779519781	3.20392795008241	1.08373943364431	3842	ABC-type spermidine/putrescine transport systems, ATPase components	E	ABC transporter, ATP-binding protein
182241	1.50478853094318	3.15281669179579	1.05425874651885	-	-	-	paREP2b
182242	1.22138057356515	2.51664691644452	1.01244766698923	-	-	-	paREP2a
182243	1.46363210177941	3.6916021135526	1.24245553003841	609	ABC-type Fe3+-siderophore transport system, permease component	P	iron (III) dicitrate transport system, permease protein, putative
182244	1.40065846585417	3.14114693251438	1.09867446650126	614	ABC-type Fe3+-hydroxamate transport system, periplasmic component	P	conserved hypothetical protein
182245	1.37878177813948	3.01802195820728	1.06578403210996	612	Predicted Zn-dependent peptidases	R	protease
182246	1.40035516611115	3.0274401414437	1.0162877127692	1475	Predicted transcriptional regulators	K	paREP1
182247	1.32783889372744	2.84439338133848	1.0072554243301	2109	ATP:corrinoid adenosyltransferase	H	cob(I)alamin adenosyltransferase
182248	1.34538168295645	3.02309988084304	1.04619846532848	1267	Phosphatidylglycerophosphatase A and related proteins	I	conserved hypothetical protein
182249	1.46272893023132	3.28238130800112	1.13043348476177	2038	NaMN:DMB phosphoribosyltransferase	H	conserved hypothetical protein
182250	1.39943022625185	3.0375184811955	1.01397708894847	2102	Predicted ATPases of PP-loop superfamily	R	conserved hypothetical protein
182251	1.43157261373315	3.22409539596939	1.0774818859228	367	Asparagine synthase (glutamine-hydrolyzing)	E	asparagine synthetase (asnB)
182252	1.47115320612901	3.24776109536949	1.11096167671023	79	Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase	E	cobC aminotransferase, conjectural
182253	1.46814401068855	3.55864547521178	1.22861908702198	368	Cobalamin-5-phosphate synthase	H	cobalamin (5'-phosphate) synthase (cobS)
182254	1.47127412667943	3.56170041970407	1.20558441189677	1270	Cobalamin biosynthesis protein CobD/CbiB	H	cobalamin biosynthesis protein B (cbiB)
182255	1.2501256861045	2.67331921426752	1.02648156720636	-	-	-	paREP4
182256	1.30893884781005	2.98230176386163	1.05375925929131	640	Predicted transcriptional regulators	K	metal ion binding transcriptional regulator, conjectural
182257	1.55709740389435	3.24789000655333	1.02427601296936	-	-	-	hypothetical protein
182258	1.36367660326269	2.90503964995438	0.99133968048933	2041	Sulfite oxidase and related enzymes	R	sulfite oxidase, conjectural
182259	1.85257348864263	4.13432121586783	1.17363595279934	-	-	-	paREP1, degenerate
182260	1.56232701465265	3.39523064376143	1.06943666438892	-	-	-	conserved protein, degenerate
182261	1.41305281650212	3.17627053614609	1.07445397488868	-	-	-	paREP6
182262	1.37177099154749	2.75213663244356	0.951066857917431	-	-	-	hypothetical protein
182263	1.40926863982575	2.98998383523835	1.03346238459036	-	-	-	hypothetical protein
182264	1.55162878696405	3.38276713280355	1.08592441013337	-	-	-	hypothetical protein
182265	1.39757420810427	3.40550660208032	1.14961178539439	-	-	-	conserved within P. aerophilum
182266	1.65959466265986	3.82160509406233	1.17813564715265	-	-	-	hypothetical protein
182267	1.29127380838338	2.82064918279364	0.940950079509752	1708	Predicted nucleotidyltransferases	R	conserved hypothetical protein
182268	1.37713591863032	3.05185761070054	1.02272535235986	-	-	-	P. aerophilum family 1964 protein
182269	1.43481113249526	3.16253825727243	1.06844341544005	-	-	-	P. aerophilum family 1964 protein
182270	1.35733686547485	2.94089854463925	1.02086693233971	-	-	-	paREP8
182271	1.46905973304481	3.86127270779433	1.1846709669537	-	-	-	hypothetical protein
182272	1.71417667063052	3.79605009532382	1.1143945851973	-	-	-	hypothetical protein
182273	1.51525149799185	3.39880869555143	1.14021235281766	-	-	-	hypothetical protein
182274	1.47334361163289	3.4417817157065	1.13439513424585	-	-	-	hypothetical protein
182275	1.38964956737249	3.14947123692962	1.07156111002854	-	-	-	hypothetical protein
182276	1.47513836006685	3.75960742177011	1.16427298151199	-	-	-	hypothetical protein
182277	1.43099646281384	3.25396575935968	1.11967738286863	-	-	-	paREP1
182278	1.36075415475051	2.96329415461007	1.0318633300376	-	-	-	hypothetical protein
182279	1.29547853196211	2.83598032436726	0.911668421300288	1215	Glycosyltransferases, probably involved in cell wall biogenesis	M	glycosyl transferase, putative
182280	1.50561983389844	3.16483578302933	1.0672618579406	5428	Uncharacterized conserved small protein	S	conserved hypothetical protein
182281	1.37498793660609	3.15317113837048	1.09100023608519	-	-	-	paREP1
182282	1.43190165665587	3.09438652362222	1.05423789765063	-	-	-	P. aerophilum family 1964 protein
182283	1.47989114359182	3.50611049456144	1.16861651567772	-	-	-	hypothetical protein
182284	1.66467995219064	3.44967886727373	1.08688607058189	-	-	-	hypothetical protein
182285	1.35727557945822	2.81664052198254	0.986940548000976	5428	Uncharacterized conserved small protein	S	conserved hypothetical protein
182286	1.37155433953917	2.95273836194826	1.03798261065329	438	Glycosyltransferase	M	glycosyltransferase (type 1)
182287	1.39956578000277	3.09524798465734	1.03856453186061	438	Glycosyltransferase	M	glycosyltransferase (type 1)
182288	1.32351700326602	3.35383373355486	1.06720371698174	-	-	-	hypothetical protein
182289	1.32707393986518	2.8459074386098	0.975154566063722	-	-	-	hypothetical protein
182290	1.41574850899286	3.42840021094898	1.06974212490196	-	-	-	hypothetical protein
182291	1.45191523198246	3.72957567247579	1.12047241329814	-	-	-	hypothetical protein
182292	1.36372789151976	3.47949555387916	1.13518854882485	-	-	-	hypothetical protein
182293	1.36423526279243	3.15894180730125	1.05150130427374	463	Glycosyltransferases involved in cell wall biogenesis	M	glycosyltransferase (type 2)
182294	1.42039302140765	3.48642368227536	1.19071162288001	-	-	-	conserved within P. aerophilum
182295	1.49712204257669	3.37459564262371	1.07567644561084	463	Glycosyltransferases involved in cell wall biogenesis	M	dolichol-phosphate mannosyltransferase
182296	1.40055495382063	2.99898852175306	1.04161033417196	438	Glycosyltransferase	M	glycosyltransferase (type 1)
182297	1.60248155553118	3.54189241124437	1.03251096587227	463	Glycosyltransferases involved in cell wall biogenesis	M	glycosyltransferase (type 2)
182298	1.64388991098204	3.45712860234776	0.946279728313538	438	Glycosyltransferase	M	glycosyltransferase (type 1)
182299	1.66216277015901	3.5141071358813	1.03423009569621	500	SAM-dependent methyltransferases	QR	conserved protein
182300	1.63367887205494	3.76565471057999	1.17108264547958	-	-	-	hypothetical protein
182301	1.51587464659159	3.27933435209874	1.05983219805639	463	Glycosyltransferases involved in cell wall biogenesis	M	glycosyltransferase (type 2)
182302	1.43413636852687	3.43507813277843	1.12466681138315	-	-	-	conserved within P. aerophilum, degenerate
182303	1.33741793668786	3.21338473423769	1.12597235242398	-	-	-	hypothetical protein
182304	1.59436880521176	3.50632008595905	1.06896806606369	-	-	-	hypothetical protein
182305	1.46910882982646	3.28237538376831	1.12261685338764	-	-	-	hypothetical protein
182306	1.52188527571681	3.38750260243329	1.05485773163674	-	-	-	hypothetical protein
182307	1.5257163827241	3.42266112608874	1.10901503847611	-	-	-	hypothetical protein
182308	1.57243346063972	3.27069782777969	1.0780297473446	-	-	-	hypothetical protein
182309	1.60678597804691	3.74184223542708	1.16114643236895	-	-	-	hypothetical protein
182310	1.55295854645351	3.51575128978257	1.07018856582535	438	Glycosyltransferase	M	glycosyltransferase (type 1)
182311	1.47847789815825	3.56296850930219	1.14318459095592	-	-	-	hypothetical protein
182312	1.34111070911823	3.51390124120169	1.21009122705562	-	-	-	hypothetical protein
182313	1.53713622184483	3.4546602711957	1.08238145352777	-	-	-	hypothetical protein
182314	1.70954737596885	3.75646960090218	1.13759978110786	-	-	-	hypothetical protein
182315	1.62949149156975	3.65962685786111	1.11139190300567	-	-	-	hypothetical protein
182316	1.42473777534281	3.3985828332896	1.17012832399433	-	-	-	hypothetical protein
182317	1.48098865657785	2.99814096633772	1.11847973244817	-	-	-	hypothetical protein
182318	1.54787077998388	3.36249504225619	1.09990439839009	-	-	-	hypothetical protein
182319	1.49286093014024	3.29988336731201	1.14050255053625	-	-	-	hypothetical protein
182320	1.71029927391615	3.92437849971905	1.1990936452129	-	-	-	hypothetical protein
182321	1.43397659509307	3.10302566899245	1.00736984249009	-	-	-	paREP15, putative coiled-coil protein
182322	1.79185120318225	4.05993558433509	1.17045985950887	-	-	-	hypothetical protein
182323	1.31962208081752	2.94367197396006	1.14638300288505	-	-	-	hypothetical protein
182324	1.2619414916765	2.89126262167691	1.02473117592226	-	-	-	paREP8
182325	1.86164496190912	4.47778765773997	1.18086191015331	-	-	-	hypothetical protein
182326	1.42392855201797	3.29656504309473	1.13688090378304	-	-	-	paREP1
182327	1.42821289373329	3.28838336695669	1.07567871965683	-	-	-	hypothetical protein
182328	1.48103534274965	3.16631741354404	1.00532788075565	-	-	-	paREP15, putative coiled-coil protein
182329	1.81828928626444	4.44727699681018	1.18223125247674	-	-	-	hypothetical protein
182330	1.39627150228928	3.12427137800054	1.04837056565642	2002	Regulators of stationary/sporulation gene expression	K	conserved hypothetical protein
182331	1.45216461413605	3.10931960707286	1.06702606917839	-	-	-	hypothetical protein
182332	1.65481395725025	4.33685964383095	1.19736752848276	-	-	-	hypothetical protein
182333	1.58622960845636	3.5590651250039	1.12452052024872	-	-	-	conserved within P. aerophilum
182334	1.48424349980114	3.05726440495703	1.01171055906988	-	-	-	paREP15, putative coiled-coil protein
182335	1.52452913713569	3.3722801741916	1.04679103446343	-	-	-	hypothetical protein
182336	1.48299602299685	3.55895847149951	1.16969719142614	-	-	-	hypothetical protein
182337	1.40382815703301	3.23799970073288	1.09179106593299	-	-	-	hypothetical protein
182338	1.46308672631166	3.2418068890443	1.1117737207912	-	-	-	hypothetical protein
182339	1.60705770408691	3.61027481126612	1.14537426503481	-	-	-	hypothetical protein
182340	1.44256776255515	3.10860709140414	1.06806284042826	-	-	-	P. aerophilum family 1964 protein
182341	1.32766995547488	2.86664035089207	0.998186385918209	2062	Phosphohistidine phosphatase SixA	T	conserved hypothetical protein
182342	1.53141573681129	3.24692040220047	1.00473621148191	-	-	-	paREP15, putative coiled-coil protein
182343	1.32443451758262	3.01611818533889	1.04442354297274	-	-	-	paREP1
182344	1.52602577087997	3.25881253233876	1.08009144501097	5550	Predicted aspartyl protease	O	conserved within P. aerophilum
182345	1.69199624605583	3.95459149644553	1.17263416717378	-	-	-	hypothetical protein
182346	1.72478386791313	3.69831272893992	1.07830621418747	-	-	-	P. aerophilum family 1964 protein, degenerate
182347	1.4681015757145	3.46923667738998	1.15617961735539	-	-	-	hypothetical protein
182348	1.40281944821954	3.16114375954439	1.12379548036973	-	-	-	conserved within P. aerophilum
182349	1.57897887758763	3.83555815292261	1.18716666027227	-	-	-	hypothetical protein
182350	1.66379311506566	3.6300677432678	1.0717755443582	438	Glycosyltransferase	M	glycosyltransferase (type 1)
182351	1.58253715581676	3.4565116902023	1.06110289743484	438	Glycosyltransferase	M	glycosyltransferase (type 1)
182352	1.60197235754801	3.59181419311856	1.07809731830033	438	Glycosyltransferase	M	glycosyltransferase (type 1)
182353	1.63028332852191	3.51976739930119	1.02141378106722	438	Glycosyltransferase	M	glycosyltransferase (type 1)
182354	1.70595295098055	3.7442058309081	1.06195460687708	463	Glycosyltransferases involved in cell wall biogenesis	M	glycosyltransferase (type 2)
182355	1.74469471899043	3.71497516997794	0.901039037375421	-	-	-	hypothetical protein
182356	1.34048244449433	2.88372080342368	0.963034904710011	1232	Protoporphyrinogen oxidase	H	conserved hypothetical protein
182357	1.44591726604084	3.11471852890768	1.0011649375557	-	-	-	paREP7
182358	1.48857202423427	3.37762802801244	1.11611371285994	-	-	-	paREP7
182359	1.48466478818651	3.40234736118092	1.20673067934305	-	-	-	hypothetical protein
182360	1.4434784464615	2.82723301722761	0.99970252004552	-	-	-	conserved hypothetical protein
182361	1.52304425914677	3.58263424781522	1.13008505488264	-	-	-	hypothetical protein
182362	1.52473121453598	3.66174357281994	1.2089984466787	531	Amino acid transporters	E	amino acid permease
182363	1.46587422736288	3.31846179265299	1.01564617753565	-	-	-	conserved within P. aerophilum
182364	1.35266179234759	3.0158600118497	1.06424314539382	-	-	-	hypothetical protein
182365	1.3878487536736	2.95036355363678	0.993505906180874	-	-	-	paREP8
182366	1.29082175475823	2.82974854781818	0.974164894943612	494	NTP pyrophosphohydrolases including oxidative damage repair enzymes	LR	ADP ribose hydrolase, putative (mutT/nudix family protein)
182367	1.39737562006122	3.21001089079118	1.10736538363827	803	ABC-type metal ion transport system, periplasmic component/surface adhesin	P	conserved hypothetical protein
182368	1.5127889687635	3.5514883328486	1.15379666163161	530	Ca2+/Na+ antiporter	P	conserved within P. aerophilum
182369	1.33836338101541	3.06294015380621	1.00260837792674	5625	Predicted transcription regulator containing HTH domain	K	conserved hypothetical protein
182370	1.43046052813614	3.32014532871747	1.12774581901444	53	Predicted Co/Zn/Cd cation transporters	P	cation efflux system protein, conjectural
182371	1.4013032783059	3.08365039710257	1.07882872352744	134	Indole-3-glycerol phosphate synthase	E	indole-3-glycerol-phosphate synthase
182372	1.36564117538662	3.25275273948075	1.14950836707177	1738	Uncharacterized conserved protein	S	conserved hypothetical protein
182373	1.4289790401466	3.50879814759777	1.18576018841367	1968	Uncharacterized bacitracin resistance protein	V	bacitracin resistence protein
182374	1.4086072468444	3.10181885941517	1.08079172767629	-	-	-	hypothetical protein
182375	1.40275160782259	3.0271190857805	1.05345080613778	535	Predicted Fe-S oxidoreductases	R	metallo cofactor biosynthesis protein
182376	1.4176031210418	3.19057884973085	1.09689706437699	181	Porphobilinogen deaminase	H	porphobilinogen deaminase (hemC)
182377	1.43248696798463	3.08649153864209	1.04901354738661	1522	Transcriptional regulators	K	heme biosynthesis protein
182378	1.34875766239921	2.88265986088068	1.01223504098862	113	Delta-aminolevulinic acid dehydratase	H	porphobilinogen synthase (delta-aminolevulinic acid dehydratase) (hemB)
182379	1.42822166274913	3.13884930310995	1.05490331546485	1648	Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain)	H	siroheme synthesis protein, conjectural
182380	1.40411752775568	3.42937359538554	1.11158501901505	-	-	-	conserved within P. aerophilum
182381	1.54900528186215	3.44093304722937	1.15780597621062	1587	Uroporphyrinogen-III synthase	H	hypothetical protein
182382	1.42207027908	3.20141543269753	1.09448650722321	7	Uroporphyrinogen-III methylase	H	uroporphyrin-III C-methyltransferase
182383	1.43100587923502	3.06200952961941	1.05616809066278	1	Glutamate-1-semialdehyde aminotransferase	H	glutamate-1-semialdehyde aminotransferase (hemL)
182384	1.36093099873618	3.00550474626304	1.0628543197934	535	Predicted Fe-S oxidoreductases	R	metallo cofactor biosynthesis protein
182385	1.4304386588361	2.81160671312042	0.984734023243309	3809	Uncharacterized protein conserved in bacteria	S	conserved within P. aerophilum
182386	1.49805397079219	3.21051002079766	1.06965830286816	-	-	-	hypothetical protein
182387	1.40437496368655	3.34041149110958	1.11933016857849	428	Predicted divalent heavy-metal cations transporter	P	conserved hypothetical protein
182388	1.48329709362495	3.29466537318691	1.15056967909667	373	Glutamyl-tRNA reductase	H	glutamyl tRNA reductase (hemA)
182389	1.40151334818393	3.21310153082404	1.21362366206966	-	-	-	hypothetical protein
182390	1.49161008478102	3.17161199993016	1.10148621514506	1759	ATP-utilizing enzymes of ATP-grasp superfamily (probably carboligases)	R	conserved hypothetical protein
182391	1.52844847262277	3.21893781237405	1.09434569594508	1141	Ferredoxin	C	conserved within P. aerophilum
182392	1.37820607141849	3.07714861130148	1.06650299249512	656	Aldo/keto reductases, related to diketogulonate reductase	R	oxidoreductase, conjectural
182393	1.37106696626938	2.93014127069152	1.02279248689301	1759	ATP-utilizing enzymes of ATP-grasp superfamily (probably carboligases)	R	conserved hypothetical protein
182394	1.4166490019365	2.96110911896039	1.00719929027112	-	-	-	hypothetical protein
182395	1.37233245932357	3.19582343416379	1.1053740050925	-	-	-	conserved within P. aerophilum
182396	1.55287366491922	3.82585269307739	1.19428604750292	-	-	-	hypothetical protein
182397	1.36704461929626	3.00805760410316	1.06367391163306	5483	Uncharacterized conserved protein	S	conserved hypothetical protein
182398	1.39987893060185	3.09674145760543	1.08133781746776	129	Dihydroxyacid dehydratase/phosphogluconate dehydratase	EG	dihydroxy-acid dehydratase (ilvD)
182399	1.47564148867977	3.13798280084631	1.06355256880179	2100	Predicted Fe-S oxidoreductase	R	metallo cofactor biosynthesis protein
182400	1.34157859521596	2.91738176668501	1.02864651812995	649	NADH:ubiquinone oxidoreductase 49 kD subunit 7	C	oxidoreductase, truncation
182401	1.45385067803271	3.71323072040566	1.17235903437126	-	-	-	hypothetical protein
182402	1.34314641291291	2.89562131344533	1.04447489700478	2414	Aldehyde:ferredoxin oxidoreductase	C	aldehyde ferredoxin oxidoreductase (aor)
182403	1.47316880487728	3.23068824198168	1.06686961070021	61	Predicted sugar kinase	G	conserved hypothetical protein
182404	1.3648755594784	3.06265711735706	1.06130077047904	1439	Predicted nucleic acid-binding protein, consists of a PIN domain and a Zn-ribbon module	R	hypothetical protein
182405	1.39687272907625	3.24363089641214	1.10456251904898	170	Dolichol kinase	I	hypothetical protein
182406	1.53103267678126	3.39820063070695	1.07656635880578	2090	Uncharacterized protein conserved in archaea	S	conserved hypothetical protein
182407	1.37775936326989	3.0095257806952	1.04425713105544	162	Tyrosyl-tRNA synthetase	J	tyrosyl-tRNA synthetase
182408	1.39759268484804	3.04297364889758	1.06566089689498	1078	HD superfamily phosphohydrolases	R	conserved hypothetical protein
182409	1.51811869344531	3.49356254049161	1.1816693286456	644	Dehydrogenases (flavoproteins)	C	conserved hypothetical protein
182410	1.4432132925463	3.10010577143173	1.03562596721442	-	-	-	hypothetical protein
182411	1.40918164772215	3.06915143309853	1.05520714857027	2521	Predicted archaeal methyltransferase	R	conserved hypothetical protein
182412	1.51638499118978	3.27807215267658	1.08569378819561	6	Xaa-Pro aminopeptidase	E	peptidase (possible proline dipeptidase)
182413	1.47768836873393	3.11737241824181	1.05755129770673	2411	Uncharacterized conserved protein	S	conserved hypothetical protein
182414	1.57361496629265	3.65171876997583	1.15270032485194	-	-	-	hypothetical protein
182415	1.36868541185264	3.1372944352863	1.03443317653592	2512	Uncharacterized membrane-associated protein/domain	S	hypothetical protein
182416	1.54685626638864	3.30162819258289	1.09208362216135	-	-	-	hypothetical protein
182417	1.38127484449094	3.52581252733913	1.19650491400597	-	-	-	hypothetical protein
182418	1.40015421649402	3.14900337659743	1.0817517077369	-	-	-	hypothetical protein
182419	1.45943927732494	3.13020843110633	1.05710742066787	189	Glutathione synthase/Ribosomal protein S6 modification enzyme (glutaminyl transferase)	HJ	ribosomal protein S6 modification protein (rimK)
182420	1.4557365108277	3.46755302587949	1.08831321978383	-	-	-	paREP10
182421	1.32050840957256	2.92414822645599	1.01207722736578	-	-	-	hypothetical protein
182422	1.38124575442058	2.98964420773368	1.03528734926593	1573	Uracil-DNA glycosylase	L	uracil DNA glycosylase (Pa-UDGa)
182423	1.47703442174991	3.25277097734032	1.05081444905762	-	-	-	hypothetical protein
182424	1.48573100015083	3.42557400560069	1.16412946665623	3356	Predicted membrane protein	S	conserved hypothetical protein
182425	1.46134497281307	3.11578960527626	1.07941296825666	468	RecA/RadA recombinase	L	DNA repair protein radA
182426	1.43055063759286	3.32877713634836	1.12506530577546	-	-	-	hypothetical protein
182427	1.43343230079148	3.06912809646914	1.08438232518449	1032	Fe-S oxidoreductase	C	conserved hypothetical protein
182428	1.54022629765851	3.49412727284202	1.13568287404704	-	-	-	hypothetical protein
182429	1.38243035187869	2.77953961360655	0.953551949560223	-	-	-	hypothetical protein containing 3 C2H2 zinc finger motifs
182430	1.43533145588635	3.23543531471971	1.08511036037451	575	CDP-diglyceride synthetase	I	conserved hypothetical protein
182431	1.48069301996228	3.18111211665711	1.08076643723702	1436	Archaeal/vacuolar-type H+-ATPase subunit F	C	H+-transporting ATP synthase subunit F (atpF)
182432	1.47387708102707	3.27132220203219	1.09128786890198	1390	Archaeal/vacuolar-type H+-ATPase subunit E	C	conserved hypothetical protein
182433	1.43001756535269	3.13765678859022	1.1121858911215	1155	Archaeal/vacuolar-type H+-ATPase subunit A	C	H+-transporting ATP synthase subunit A (atpA)
182434	1.46747672310026	3.379035497408	1.13498728260236	2012	DNA-directed RNA polymerase, subunit H, RpoH/RPB5	K	DNA-directed RNA polymerase subunit H (rpoH)
182435	1.40149698428073	3.06258945848957	1.10345699005945	85	DNA-directed RNA polymerase, beta subunit/140 kD subunit	K	DNA-directed RNA polymerase subunit B (rpoB)
182436	1.46135217185494	3.14530908602523	1.09311123040669	86	DNA-directed RNA polymerase, beta' subunit/160 kD subunit	K	DNA-directed RNA polymerase subunit A' (rpoA1)
182437	1.47937167740532	3.30053014479381	1.12383385786686	86	DNA-directed RNA polymerase, beta' subunit/160 kD subunit	K	DNA-directed RNA polymerase subunit A'' (rpoA2)
182438	1.44226720725951	3.1663328955922	1.0353452318605	1911	Ribosomal protein L30E	J	ribosomal protein L30
182439	1.42796306869693	3.01830049139596	1.02588669157741	195	Transcription elongation factor	K	transcription termination factor NusA, putative
182440	1.51797669229485	3.22090000438725	1.0705886409702	48	Ribosomal protein S12	J	ribosomal protein S12
182441	1.61131715988946	3.52414225789721	1.0447275990518	202	DNA-directed RNA polymerase, alpha subunit/40 kD subunit	K	DNA-directed RNA polymerase subunit D (rpoD)
182442	1.67562015635847	3.71835789532739	1.11070520146453	1727	Ribosomal protein L18E	J	ribosomal protein L18
182443	1.55907822597408	3.41629787140667	1.09317711746235	102	Ribosomal protein L13	J	ribosomal protein L13
182444	1.48195686178095	3.18675085259523	1.06280705718396	103	Ribosomal protein S9	J	ribosomal protein S9
182445	1.67093110151883	3.63032431657791	1.13989771050973	1644	DNA-directed RNA polymerase, subunit N (RpoN/RPB10)	K	DNA-directed RNA polymerase subunit N (rpoN)
182446	1.5291638811033	3.47401841141661	1.09978564623442	1958	Small nuclear ribonucleoprotein (snRNP) homolog	K	small nuclear ribonucleoprotein homolog (Sm-like)
182447	1.58681143612199	3.34616774471479	1.07347898636808	1812	Archaeal S-adenosylmethionine synthetase	E	S-adenosylmethionine synthetase
182448	1.53423324401769	3.31462407683585	1.0923694637385	2433	Uncharacterized conserved protein	S	conserved hypothetical protein
182449	1.50755043106313	3.26890026118204	1.04917514490335	478	RIO-like serine/threonine protein kinase fused to N-terminal HTH domain	T	conserved hypothetical protein
182450	1.60378508233657	3.50834006078275	1.10847122977013	1860	Uncharacterized protein conserved in archaea	S	conserved hypothetical protein
182451	1.50613094894761	3.24325067182909	1.0491178503769	615	Cytidylyltransferase	MI	cytidyltransferase
182452	1.52840353005829	3.43759644355412	1.14484405574385	1515	Deoxyinosine 3'endonuclease (endonuclease V)	L	DNA endonuclease V, conjectural
182453	1.45585908488941	3.31330879534831	1.11065668731797	589	Universal stress protein UspA and related nucleotide-binding proteins	T	conserved protein (probable universal stress protein homolog)
182454	1.45618496228282	3.64618300354892	1.21986974348997	395	ABC-type sugar transport system, permease component	G	multiple sugar transport permease protein
182455	1.53477181455033	3.79291014039728	1.14505162234696	1175	ABC-type sugar transport systems, permease components	G	multiple sugar transport permease protein
182456	1.44888003909077	3.27850751173742	1.12022050006797	1653	ABC-type sugar transport system, periplasmic component	G	multiple sugar binding protein
182457	1.3044770706796	2.76047278826775	0.959988389893733	515	Serine/threonine protein kinase	RTKL	hypothetical protein with partial (eukaryotic) protein kinase domain
182458	1.41716316258181	3.1727568236313	1.0971226953324	2888	Predicted Zn-ribbon RNA-binding protein with a function in translation	J	conserved hypothetical protein
182459	1.45787199322891	3.11465136362102	1.07672863035219	2092	Translation elongation factor EF-1beta	J	translation elongation factor aEF-1 beta subunit
182460	1.40579014351166	3.07227601356263	1.0841143302284	464	ATPases of the AAA+ class	O	AAA family ATPase, possible cell division control protein cdc48
182461	1.37420177505262	3.03005094825181	1.026546975511	-	-	-	hypothetical protein
182462	1.45823814059132	3.23415708559807	1.10379181323274	258	5'-3' exonuclease (including N-terminal domain of PolI)	L	DNA endonuclease rad2 homolog
182463	1.41693566692221	2.93703656497825	1.04147939836465	-	-	-	hypothetical protein
182464	1.49393984869131	3.15895950297942	1.06937545935612	2518	Protein-L-isoaspartate carboxylmethyltransferase	O	protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT)
182465	1.58843499540581	3.51174723649334	1.11418157922921	-	-	-	hypothetical protein
182466	1.47317341718158	3.1701922211272	1.07086227996417	17	Aspartyl/asparaginyl-tRNA synthetases	J	aspartyl-tRNA synthetase
182467	1.43851779704264	3.29794614721766	1.09853802850142	195	Transcription elongation factor	K	conserved hypothetical protein
182468	1.47780826676722	3.21096411963083	1.11899252561502	1031	Uncharacterized Fe-S oxidoreductase	C	conserved hypothetical protein
182469	1.45784328983807	3.45900543811616	1.09627049755659	-	-	-	hypothetical protein
182470	1.34513987013763	2.99790164456322	1.06242147189974	1990	Uncharacterized conserved protein	S	conserved hypothetical protein
182471	1.37789418737991	3.09269110429133	1.10208215539693	1404	Subtilisin-like serine proteases	O	surface layer-associated STABLE protease, conjectural
182472	1.37806727386951	2.96078527971201	0.960018496590641	494	NTP pyrophosphohydrolases including oxidative damage repair enzymes	LR	diadenosine 5'5'''-P1,P4-tetraphosphate pyrophosphohydrolase (mutT/nudix family protein)
182473	1.55698742696279	3.42170902964171	1.05927274566224	-	-	-	hypothetical protein
182474	1.49743889036165	3.25246815880734	1.11527146948632	1053	Succinate dehydrogenase/fumarate reductase, flavoprotein subunit	C	succinate dehydrogenase flavoprotein subunit (sdhA)
182475	1.54468636812565	3.29244882029637	1.02059966788541	479	Succinate dehydrogenase/fumarate reductase, Fe-S protein subunit	C	succinate dehydrogenase iron-sulfur subunit (sdhB)
182476	1.51912744720251	3.57919891575431	1.10843418192405	2009	Succinate dehydrogenase/fumarate reductase, cytochrome b subunit	C	succinate dehydrogenase cytochrome b subunit (sdhC)
182477	1.41199484233492	3.1500730312399	1.11355661166667	-	-	-	succinate dehydrogenase subunit D (sdhD)
182478	1.46126141038854	3.25964378774305	1.03964026067278	592	DNA polymerase sliding clamp subunit (PCNA homolog)	L	proliferating-cell nuclear antigen homolog (PCNA)
182479	1.48172339148544	3.21555903944869	1.08103181467876	2025	Electron transfer flavoprotein, alpha subunit	C	electron transfer flavoprotein alpha subunit (etfA)
182480	1.51141201465321	3.36252828275013	1.09194420194676	2086	Electron transfer flavoprotein, beta subunit	C	electron transfer flavoprotein beta subunit (etfB)
182481	1.56397923315846	3.13424756376413	1.00702687072692	2440	Ferredoxin-like protein	C	ferredoxin like protein
182482	1.46803945150076	3.28752002701254	1.1047413548348	644	Dehydrogenases (flavoproteins)	C	electron transfer flavoprotein-quinone oxidoreductase
182483	1.56695301051153	3.23272340206392	1.04757421625119	314	Molybdopterin converting factor, large subunit	H	molybdenum cofactor biosynthesis protein D/E
182484	1.55052150770447	3.34214133975804	1.03685905667472	-	-	-	hypothetical protein
182485	1.50793367016462	3.30053977181469	1.10263306807222	467	RecA-superfamily ATPases implicated in signal transduction	T	conserved hypothetical protein
182486	1.5298217794549	3.51018463697668	1.12407676257183	-	-	-	hypothetical protein
182487	1.77412102028075	3.86516857799958	1.08104065653297	1321	Mn-dependent transcriptional regulator	K	transcriptional regulatory protein, conjectural
182488	1.62948826849311	3.64061478999842	1.08380410762512	-	-	-	hypothetical protein
182489	1.54599810597415	3.28101539706583	1.08614813838518	49	Ribosomal protein S7	J	ribosomal protein S7
182490	1.44634063613035	3.12398415836654	1.06580570088826	470	ATPase involved in DNA replication	L	replication factor C small subunit
182491	1.49135471204599	3.31420672378632	1.08565909906338	470	ATPase involved in DNA replication	L	replication factor C large subunit
182492	1.57991447468002	3.22790447337418	0.832834484225047	-	-	-	hypothetical protein
182493	1.57359400797319	3.50428576186136	1.12446809760221	1474	Cdc6-related protein, AAA superfamily ATPase	LO	cell division control protein 6 (cdc6), putative
182494	1.67634022784632	3.83250818170802	1.09651207184733	640	Predicted transcriptional regulators	K	transcriptional regulatory protein (helix-turn-helix), putative
182495	1.5831320858955	3.41514811161371	1.07174364283458	4998	Predicted endonuclease (RecB family)	L	conserved hypothetical protein
182496	1.50653500297026	3.35547907629933	1.13642787070993	182	Predicted translation initiation factor 2B subunit, eIF-2B alpha/beta/delta family	J	translation initiation factor aIF-2B alpha subunit
182497	1.66925935791245	3.8479760986489	1.08211727221226	-	-	-	hypothetical protein
182498	1.54055271628754	3.35393469719852	1.09464371403578	144	tRNA and rRNA cytosine-C5-methylases	J	RNA binding protein (fmu, PCNA P120 homolog), probable
182499	1.43205757050927	2.89894124772278	0.924745189436073	-	-	-	hypothetical protein
182500	1.51235085328603	3.30462470436246	1.09253000381739	2078	Uncharacterized conserved protein	S	conserved hypothetical protein
182501	1.53388772309675	3.4660135496259	1.11721518164804	-	-	-	hypothetical protein
182502	1.64138240390484	3.65548038520084	1.09890314992912	-	-	-	hypothetical protein
182503	1.49523059803126	3.51327414184353	1.13148113794697	1030	Membrane-bound serine protease (ClpP class)	O	conserved protein (nfeD homolog)
182504	1.54399730968325	3.43877012095584	1.11665459655794	330	Membrane protease subunits, stomatin/prohibitin homologs	O	conserved protein (band 7 homolog)
182505	1.36830518774196	2.79882103968117	0.963134630245208	-	-	-	hypothetical protein
182506	1.63776797594617	3.72748832542141	1.11277209330892	1527	Archaeal/vacuolar-type H+-ATPase subunit C	C	H+-transporting ATP synthase subunit C (atpC)
182507	1.65030986728586	3.96676017116095	1.15781499208489	-	-	-	H+-transporting ATP synthase subunit C (atpC)
182508	1.57696386201387	3.26896269335573	1.06349197135234	-	-	-	hypothetical protein
182509	1.45086813486356	3.18734233781135	1.05375143661723	1394	Archaeal/vacuolar-type H+-ATPase subunit D	C	H+-transporting ATP synthase subunit D (atpD)
182510	1.49995061110523	3.31273178683453	1.10800267436899	1161	Predicted GTPases	R	GTP binding protein, conjectural
182511	1.49158472235533	3.60164317477687	1.12130959564697	-	-	-	hypothetical protein
182512	1.41952722731534	3.08724086528936	1.02902287872012	-	-	-	hypothetical protein
182513	1.48587758302356	3.1936639677445	1.09456032213669	492	Thioredoxin reductase	O	hypothetical protein
182514	1.49381076222035	3.2267727347251	1.06915906761395	1109	Phosphomannomutase	G	phosphomannomutase (pmm)
182515	1.49745818510031	3.3308607117217	1.1050918750078	1415	Uncharacterized conserved protein	S	conserved hypothetical protein
182516	1.64418296956072	3.4896350422583	1.0417960145727	284	Orotidine-5'-phosphate decarboxylase	F	orotidine-5'-monophosphate decarboxylase (pyrF)
182517	1.51334144380841	3.25864711155256	1.04693944035568	540	Aspartate carbamoyltransferase, catalytic chain	F	aspartate carbamoyltransferase catalytic subunit (pyrB)
182518	1.54077839534561	3.28461845220038	1.08937485550167	456	Acetyltransferases	R	N-acyltransferase
182519	1.4376605847155	3.41625671798409	1.17562325203263	2064	Flp pilus assembly protein TadC	NU	hypothetical protein
182520	1.45591824335311	3.13826433347696	1.07585808635513	630	Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella bios	NU	conserved protein (possible type II secretion, gsp)
182521	1.52422992603863	3.5234801654653	1.14282266324713	-	-	-	hypothetical protein
182522	1.48719646389339	3.28994049448828	1.11195032700134	343	Queuine/archaeosine tRNA-ribosyltransferase	J	queuine tRNA-ribosyltransferase
182523	1.45137574503379	3.12020666072959	1.08522092455157	1938	Archaeal enzymes of ATP-grasp superfamily	R	conserved hypothetical protein
182524	1.49889230460782	3.20923499952381	1.00641631494811	1675	Transcription initiation factor IIE, alpha subunit	K	conserved hypothetical protein
182525	1.48591626818702	3.29455874476757	1.10024877146111	2262	GTPases	R	conserved protein (possible hflX)
182526	1.56033480725613	3.39388350734634	1.07180312876224	1813	Predicted transcription factor, homolog of eukaryotic MBF1	K	conserved helix-turn-helix protein
182527	1.53735408199762	3.2477145254006	1.08028596524733	1370	Prefoldin, molecular chaperone implicated in de novo protein folding, alpha subunit	O	conserved protein with predicted RNA binding PUA domain
182528	1.44095322824744	3.13569732506639	1.05509064394564	1676	tRNA splicing endonuclease	J	hypothetical protein
182529	1.51550149413696	3.36039617618232	1.08187664125444	1958	Small nuclear ribonucleoprotein (snRNP) homolog	K	small nuclear ribonucleoprotein homolog (Sm-like)
182530	1.55238111590923	3.93169596030021	1.22413893641284	2095	Multiple antibiotic transporter	U	conserved hypothetical protein
182531	1.50381148052499	3.3664080296051	1.12821416087377	489	ATPases involved in chromosome partitioning	D	conserved protein (possible ATP binding)
182532	1.42267963407691	3.0961169602675	1.07201292867429	295	Cytidine deaminase	F	cytidine deaminase
182533	1.53110556472099	3.30598246161251	1.06075634638172	-	-	-	hypothetical protein
182534	1.55076683382572	3.56319030833301	1.15867267362793	1028	Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)	IQR	short chain dehydrogenase
182535	1.49121332158627	3.16120901514988	1.05564594352007	112	Glycine/serine hydroxymethyltransferase	E	serine hydroxymethyltransferase
182536	1.48020739206049	3.21526369752913	1.07173041555645	315	Molybdenum cofactor biosynthesis enzyme	H	molybdenum cofactor biosynthesis protein (moaC)
182537	1.5854475848759	3.41426942077814	0.975889983168106	-	-	-	hypothetical protein
182538	1.47748177441906	3.23881129159677	1.10135068573695	1304	L-lactate dehydrogenase (FMN-dependent) and related alpha-hydroxy acid dehydrogenases	C	conserved protein (possible oxidoreductase)
182539	1.5875103246046	3.31827885406787	1.04069200439233	90	Ribosomal protein L2	J	ribosomal protein L2
182540	1.58331655071393	3.33639024315108	1.06407655029676	1383	Ribosomal protein S17E	J	ribosomal protein S17
182541	1.43593376686119	3.10315404151583	1.05679060288212	1047	FKBP-type peptidyl-prolyl cis-trans isomerases 2	O	FKBP-type peptidyl-prolyl cis-trans isomerases
182542	1.45399493622838	3.16547604232496	1.02812173291545	638	20S proteasome, alpha and beta subunits	O	proteasome beta subunit
182543	1.53400630041726	3.75687811231858	1.12442292058967	-	-	-	hypothetical protein
182544	1.49948189340125	3.64706646417974	1.13013440282376	-	-	-	hypothetical protein
182545	1.50977070913006	2.97043028838782	0.96792917239652	1051	ADP-ribose pyrophosphatase	F	mutT/nudix family protein
182546	1.56551571613872	3.27367442898852	1.06368355570964	-	-	-	hypothetical protein
182547	1.4651275908778	3.12445047775531	1.07339942718477	148	Enolase	G	enolase
182548	1.44652849485943	3.07533634597334	1.0341623654463	2005	N-terminal domain of molybdenum-binding protein	R	molybdenum-pterin-binding protein, conjectural
182549	1.45306024596224	3.2825932152893	1.08306065373757	2896	Molybdenum cofactor biosynthesis enzyme	H	molybdenum cofactor biosynthesis protein (moaA)
182550	1.53911420435914	3.49045342328746	1.13551762076399	515	Serine/threonine protein kinase	RTKL	serine/threonine protein kinase, putative
182551	1.40582173880035	3.06627494663119	1.0521205775601	1716	FOG: FHA domain	T	conserved protein with Forkhead-associated (FHA) domain
182552	1.44973434701464	3.14871708272366	1.0133306731119	52	Ribosomal protein S2	J	ribosomal protein S2
182553	1.47352061681479	3.14680304364053	1.01583470219775	1355	Predicted dioxygenase	R	conserved hypothetical protein
182554	1.47820637954541	3.35941419651185	1.1499565178354	469	Pyruvate kinase	G	pyruvate kinase
182555	1.45937018703723	3.0974347610395	1.08180916857136	1782	Predicted metal-dependent RNase, consists of a metallo-beta-lactamase domain and an RNA-binding KH d	R	mRNA 3'-end processing factor, conjectural
182556	1.42737868673719	2.95882207282744	1.0306013391466	215	Cysteinyl-tRNA synthetase	J	cysteinyl-tRNA synthetase
182557	1.53449448529255	3.37787393668277	1.11578141821216	-	-	-	paREP1
182558	1.49370322631162	3.23955998573652	1.08494012137931	-	-	-	P. aerophilum family 1964 protein
182559	1.48612692945841	3.32978812017848	1.16888165897401	-	-	-	hypothetical protein
182560	1.44186298508529	3.25603770168415	1.12994017380099	-	-	-	hypothetical protein
182561	1.39189135461699	3.12929679428003	1.10438464016112	-	-	-	hypothetical protein
182562	1.51070921182497	3.41547805264576	1.08468397878913	2078	Uncharacterized conserved protein	S	conserved hypothetical protein
182563	1.50336049934117	3.36427344239326	1.07140905389514	5373	Predicted membrane protein	S	hypothetical protein
182564	1.42658262326248	3.11788575459775	0.997725973246272	1437	Adenylate cyclase, class 2 (thermophilic)	F	adenylate cyclase
182565	1.36341990246868	3.00030418081641	1.03771228139181	1793	ATP-dependent DNA ligase	L	DNA ligase
182566	1.35315779893178	2.85848029498375	1.01131003254563	-	-	-	hypothetical protein
182567	1.48134717275368	3.25231534232596	1.10601335972411	524	Sugar kinases, ribokinase family	G	sugar kinase, possible phosphofructokinase
182568	1.27991571061137	2.6684484888611	0.927824663589935	-	-	-	conserved hypothetical protein
182569	1.50612745321087	3.43237049288159	1.11718620291272	1208	Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translati	MJ	sugar-phosphate nucleotidyl transferase
182570	1.43304190620647	3.17983914572123	1.07456980551142	-	-	-	hypothetical protein
182571	1.39404089696955	2.99600747519626	1.05620568828573	-	-	-	hypothetical protein
182572	1.57436793543936	3.55763239958582	1.15549422373828	1585	Membrane protein implicated in regulation of membrane protease activity	OU	conserved hypothetical protein
182573	1.42209239166057	3.09261711929429	1.08073822177247	1341	Predicted GTPase or GTP-binding protein	R	conserved hypothetical protein
182574	1.49669085911345	3.26434564358354	1.08975549003082	-	-	-	paREP1
182575	1.53956224777028	3.27103597338741	1.12525818420493	-	-	-	paREP2a
182576	1.52081550804815	3.40953023017819	1.12588719721237	-	-	-	paREP2a
182577	1.4472332166063	3.1320044360245	1.11256099354965	-	-	-	paREP2b
182578	1.31511819906385	3.08283734529068	1.06833502876256	-	-	-	paREP2b
182579	1.52023033938746	3.00783050711517	0.979963593598982	-	-	-	hypothetical protein
182580	1.51470697311497	3.33964988001038	1.10794372854435	1145	Ferredoxin	C	hypothetical protein
182581	1.37692255048507	2.95932675441177	1.0256183859647	727	Predicted Fe-S-cluster oxidoreductase	R	conserved hypothetical protein
182582	1.53073777099954	3.08968730090101	1.03220920105401	2163	Ribosomal protein L14E/L6E/L27E	J	ribosomal protein L14
182583	1.55379253788807	3.39557158631109	1.09466057269595	130	Pseudouridine synthase	J	tRNA pseudouridine synthase B
182584	1.65647790493338	3.37230181539909	1.1238780727073	1888	Uncharacterized protein conserved in archaea	S	conserved hypothetical protein
182585	1.4104243961193	3.47209782784465	1.16447735383338	1814	Uncharacterized membrane protein	S	conserved hypothetical protein
182586	1.50778652244639	3.21837538559067	1.07043512850564	-	-	-	hypothetical protein
182587	1.38687138274895	3.01288820147053	1.05812802782177	673	Predicted dehydrogenases and related proteins	R	conserved NAD/P oxidoreductase
182588	1.40945569114606	3.1175026080722	1.05077272992624	-	-	-	hypothetical protein
182589	1.46571125723257	3.58383711179458	1.18035965917593	1266	Predicted metal-dependent membrane protease	R	conserved hypothetical protein
182590	1.45290120446765	3.03502074378986	1.03160166312358	-	-	-	hypothetical protein
182591	1.42547412496861	3.13374855335552	1.09181152748696	1058	Predicted nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA	R	competence damage protein, conjectural
182592	1.47048529295099	3.68408249057572	1.23233632350888	697	Permeases of the drug/metabolite transporter (DMT) superfamily	GER	conserved hypothetical protein
182593	1.44682446288114	3.14580625959684	1.06652603024837	1225	Peroxiredoxin	O	antioxidant protein, putative
182594	1.48884654953691	3.31391332796922	1.12559264088926	-	-	-	hypothetical protein
182595	1.40897719483116	3.26824713035765	1.10574753420099	2044	Predicted peroxiredoxins	R	conserved hypothetical protein
182596	1.45133590128914	3.24368892145801	1.10112445038	177	Predicted EndoIII-related endonuclease	L	DNA-(apurinic or apyrimidinic site) lyase (endonuclease III, PaNth)
182597	1.36044530335949	2.85761242758794	1.02720078144032	-	-	-	conserved hypothetical protein
182598	1.43755186143941	3.1951521363583	1.09029791179672	-	-	-	hypothetical protein
182599	1.45573365228947	3.11568142201874	1.07989940634844	2317	Zn-dependent carboxypeptidase	E	thermostable carboxypeptidase
182600	1.46965072225015	3.26414047746199	1.13247007643983	-	-	-	hypothetical protein
182601	1.29025927500839	2.92043250243507	1.00922995838989	1019	Predicted nucleotidyltransferase	R	conserved protein (possible cytidylyltransferase)
182602	1.42795842290214	3.11026181654853	1.07807172960479	4882	Predicted aminopeptidase, Iap family	R	conserved hypothetical protein
182603	1.39568963872757	3.17681873252097	1.03596134525544	-	-	-	hypothetical protein
182604	1.36719370238766	3.00178872827652	1.0632445374978	1254	Acylphosphatases	C	conserved hypothetical protein
182605	1.49905002143028	3.25780864641797	1.11154239377913	123	Deacetylases, including yeast histone deacetylase and acetoin utilization protein	BQ	hypothetical protein
182606	1.51200550967872	3.26262854539448	1.09782132401993	77	Prephenate dehydratase	E	chorismate mutase/prephenate dehydratase (P-protein)
182607	1.40046771129232	3.12632031875599	1.11629999038223	1204	Superfamily II helicase	R	ATP-dependent, DNA binding helicase
182608	1.66919695571857	3.82792802616999	1.16921342200822	-	-	-	hypothetical protein
182609	1.31714693184019	2.89665404315261	1.01767153746524	1241	Predicted ATPase involved in replication control, Cdc46/Mcm family	L	DNA replication licensing factor (mcm)
182610	1.43223312721643	3.08025111449782	0.997343310533135	-	-	-	paREP8
182611	1.61488992410368	3.54475856933877	1.05536352417979	-	-	-	hypothetical protein
182612	1.45017609586221	3.18620591205261	1.0696120186712	2250	Uncharacterized conserved protein related to C-terminal domain of eukaryotic chaperone, SACSIN	S	conserved hypothetical protein
182613	1.40588497177184	3.08876354817007	1.00446923888397	1708	Predicted nucleotidyltransferases	R	conserved hypothetical protein
182614	1.41361307185039	2.80556978378068	0.975961206403789	-	-	-	paREP7
182615	1.46623470928364	3.52619827341592	1.07858616300189	-	-	-	hypothetical protein
182616	1.40114131053267	3.32647845582705	1.19055688954296	-	-	-	hypothetical protein
182617	1.73614084065564	4.07709234341725	1.06547207108902	-	-	-	conserved within P. aerophilum
182618	1.4328141315085	3.49022861941564	1.11127247383786	4346	Predicted membrane-bound dolichyl-phosphate-mannose-protein mannosyltransferase	O	hypothetical protein
182619	1.39017971671635	3.16603681034747	1.04563475374001	-	-	-	hypothetical protein
182620	1.49766368773212	3.47879885310216	1.07888908939748	-	-	-	hypothetical protein
182621	1.47500778406459	3.34743933846502	1.16963707288162	-	-	-	hypothetical protein
182622	1.46533122541263	3.27750304190509	1.08659227674951	-	-	-	P. aerophilum family 1964 protein part 1, authentic frameshift
182623	1.6093337142051	3.44215717849773	1.07041733569797	-	-	-	P. aerophilum family 1964 protein part 2, authentic frameshift
182624	1.36671491515551	3.05684286433173	1.04578737797402	79	Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase	E	histidinol-phosphate aminotransferase (hisC)
182625	1.34907558357066	2.88713750352392	0.962696450712295	-	-	-	paREP15, putative coiled-coil protein
182626	1.38622049999833	2.97912429102293	1.04754682436415	1243	Histone acetyltransferase	KB	conserved hypothetical protein
182627	1.43728458683788	3.06501472521261	1.07901534776053	-	-	-	hypothetical protein
182628	1.52811688623755	3.35415525528363	1.11796602589737	-	-	-	conserved hypothetical protein
182629	1.58568051817684	3.72389924046537	1.16535643268741	-	-	-	hypothetical protein
182630	1.45887570336186	3.1334710301677	1.0541428477818	500	SAM-dependent methyltransferases	QR	conserved hypothetical protein
182631	1.55729948871985	3.40597646714521	1.07784739141298	-	-	-	hypothetical protein
182632	1.4910242120666	3.4383116864454	1.14529039026035	-	-	-	hypothetical protein
182633	1.5065450396569	3.43311819664368	1.14831051074056	-	-	-	hypothetical protein
182634	1.51338674120602	3.61564366575524	1.16690970178316	-	-	-	hypothetical protein
182635	1.48632566095908	3.29461264432803	1.13682885266401	-	-	-	hypothetical protein
182636	1.45317792452656	3.20965581099717	1.09077524594221	719	ABC-type transport system involved in Fe-S cluster assembly, permease component	O	conserved hypothetical protein
182637	1.36507877424755	2.97302846797891	1.03084924326854	1571	Predicted DNA-binding protein containing a Zn-ribbon domain	R	conserved hypothetical protein
182638	1.42572755690528	3.13428125348154	1.09200874402242	614	ABC-type Fe3+-hydroxamate transport system, periplasmic component	P	conserved hypothetical protein
182639	1.35714710065409	3.3279496212862	1.0897331153081	-	-	-	conserved hypothetical protein
182640	1.46423814064599	3.24108521832446	1.07255868637471	-	-	-	hypothetical protein
182641	1.46134852177625	3.15305765976424	1.06304345171601	1013	Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, beta subunit	C	2-oxoacid ferredoxin oxidoreductase beta subunit
182642	1.43590613562941	3.08849489324094	1.08897072378732	674	Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, alpha subunit	C	2-oxoacid ferredoxin oxidoreductase alpha subunit
182643	1.562464428511	3.52047290298474	1.03901299694772	-	-	-	hypothetical protein
182644	1.45944233265733	3.70296847615065	1.1911268003047	2095	Multiple antibiotic transporter	U	conserved hypothetical protein part 2, authentic frameshift
182645	1.60840521207683	3.87863796487566	1.11776679093408	2095	Multiple antibiotic transporter	U	conserved hypothetical protein part 1, authentic frameshift
182646	1.33944818609502	2.79448753966953	1.01308737913298	1980	Archaeal fructose 1,6-bisphosphatase	G	conserved hypothetical protein
182647	1.50658015150478	3.21721027607176	1.00812692036845	454	Histone acetyltransferase HPA2 and related acetyltransferases	KR	conserved hypothetical protein
182648	1.41667864498228	3.08772698830696	1.04777933826387	505	Carbamoylphosphate synthase small subunit	EF	carbamoyl-phosphate synthase small subunit
182649	1.37561323731321	2.99377113018998	1.08334922637195	458	Carbamoylphosphate synthase large subunit (split gene in MJ)	EF	carbamoyl-phosphate synthase large subunit
182650	1.38668335710145	3.03861205667609	1.05654770060194	189	Glutathione synthase/Ribosomal protein S6 modification enzyme (glutaminyl transferase)	HJ	ribosomal protein S6 modification protein (rimK)
182651	1.46885980234857	3.30461332069978	1.1208189933101	309	Hydrogenase maturation factor	O	hydrogenase expression/formation protein HypE
182652	1.39003170862923	3.05084003049393	1.06175094367128	1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR	KE	aminotransferase, conjectural
182653	1.51450438893826	3.25437160888372	1.07179421490056	1628	Uncharacterized conserved protein	S	conserved hypothetical protein
182654	1.36687485756336	2.90919303922528	1.02676024911875	687	Spermidine/putrescine-binding periplasmic protein	E	putrescine/spermidine binding protein, conjectural
182655	1.46624814246403	3.05905367264752	1.04966987505974	-	-	-	paREP2b
182656	1.64415738120213	3.48937456800983	1.12717046151423	-	-	-	paREP2a
182657	1.45460173571526	3.067897210665	1.0447487478514	118	Glutamine amidotransferase	E	amidotransferase (hisH)
182658	1.296632306248	2.88173484021809	0.97487609841254	139	Phosphoribosyl-AMP cyclohydrolase	E	phosphoribosyl-AMP cyclohydrolase
182659	1.42053080544259	3.10809842393898	1.08258017829332	79	Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase	E	histidinol-phosphate aminotransferase (hisC)
182660	1.46660381301205	3.44742396084309	1.15447296617031	-	-	-	paREP1, degenerate
182661	1.39019752429141	3.1808988093119	1.12323593469414	40	ATP phosphoribosyltransferase	E	ATP phosphoribosyltransferase (hisG)
182662	1.38747950718973	2.98008816471724	1.04488658717388	125	Thymidylate kinase	F	thymidylate kinase (tmk)
182663	1.42047763161517	3.22992223561257	1.08672486442025	-	-	-	hypothetical protein
182664	1.44796082366114	3.44207780661013	1.13995216453641	1266	Predicted metal-dependent membrane protease	R	conserved hypothetical protein
182665	1.66379048010386	3.50128775396786	1.07195244626938	1611	Predicted Rossmann fold nucleotide-binding protein	R	conserved hypothetical protein
182666	1.38635798116229	3.0296504238446	1.00200710021996	521	Molybdopterin biosynthesis enzymes	H	molybdenum cofactor biosynthesis protein (moaB)
182667	1.49442059981635	3.33959692179073	1.05256287406406	3255	Putative sterol carrier protein	I	conserved hypothetical protein
182668	1.43143538125169	3.02316449532773	1.04015136431409	4996	Predicted phosphatase	R	conserved hypothetical protein
182669	1.37647983329004	3.02402156309636	1.07662449806441	15	Adenylosuccinate lyase	F	adenylosuccinate lyase (purB)
182670	1.49315856259587	3.25138969042377	1.05176383375618	-	-	-	paREP1
182671	1.40495762699945	3.04368075904927	1.06604680499172	104	Adenylosuccinate synthase	F	adenylosuccinate synthetase (purA)
182672	1.39083493789111	3.14153256296776	1.07534008513805	2886	Uncharacterized small protein	S	hypothetical protein
182673	1.56740467065354	3.72703233719656	1.13970071571162	-	-	-	hypothetical protein
182674	1.56082075331356	3.55967348253429	1.14655206213884	-	-	-	hypothetical protein
182675	1.42215696288528	3.08206964600599	1.00806549275813	-	-	-	paREP1
182676	1.32505305171066	2.94738534051658	1.02376428435668	2509	Uncharacterized FAD-dependent dehydrogenases	R	conserved hypothetical protein
182677	1.59313954391986	3.67023730893975	1.13535036735632	-	-	-	P. aerophilum family 70 protein
182678	1.53036774902481	3.33231968755457	1.14763962021325	-	-	-	P. aerophilum family 68 protein
182679	1.44400513834003	3.27580069296868	1.12600705075393	140	Phosphoribosyl-ATP pyrophosphohydrolase	E	phosphoribosyl-ATP pyrophosphohydrolase
182680	1.41043451000093	3.13486376694282	1.07271370922836	141	Histidinol dehydrogenase	E	histidinol dehydrogenase (hisD)
182681	1.44634810339151	3.09387315484574	1.03541127688563	107	Imidazoleglycerol-phosphate synthase	E	histidine biosynthesis protein (hisF,cyclase)
182682	1.34096719549405	2.96047607912631	1.03609421928667	131	Imidazoleglycerol-phosphate dehydratase	E	imidazoleglycerol-phosphate dehydratase
182683	1.41683114381107	3.04763869833173	1.04428097936711	106	Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase	E	phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (hisA)
182684	1.64205311670456	3.60260205520931	1.1115852661023	-	-	-	hypothetical protein
182685	1.51342343480063	3.42523164271411	1.10986691206716	5550	Predicted aspartyl protease	O	conserved within P. aerophilum
182686	1.62237476755768	3.41511694630122	1.0672559350427	-	-	-	hypothetical protein
182687	1.51246036591868	3.21400350411548	1.00647438342414	-	-	-	hypothetical protein
182688	1.31545779461242	2.74555449766838	0.962608082418508	1690	Uncharacterized conserved protein	S	conserved hypothetical protein
182689	1.46363984051527	3.28004487500667	1.13645831705488	-	-	-	P. aerophilum family 59 protein
182690	1.42190067197025	3.38227183198709	1.10269947349757	-	-	-	P. aerophilum family 3 protein
182691	1.45468069391138	3.28675363470087	1.035276229197	-	-	-	conserved within P. aerophilum
182692	1.42062256467232	3.10278683582406	1.05363460316065	1506	Dipeptidyl aminopeptidases/acylaminoacyl-peptidases	E	acylamino-acid-releasing enzyme, conjectural
182693	1.31240315373093	2.91771919904828	1.0312544729833	252	L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit D	EJ	asparaginase (asnA)
182694	1.3829704882251	2.97516372864895	0.99607162330234	1896	Predicted hydrolases of HD superfamily	R	conserved hypothetical protein
182695	1.35924966680248	2.98881446231027	1.00252131236045	1779	C4-type Zn-finger protein	R	conserved hypothetical protein
182696	1.29076332547956	3.29881066505685	1.16914875353165	-	-	-	hypothetical protein
182697	1.37226485764553	3.12337662757492	1.06811783876942	-	-	-	hypothetical protein
182698	1.40038838374888	3.09365233164695	1.05814592410583	1608	Predicted archaeal kinase	R	conserved hypothetical protein
182699	1.3401596766703	2.87568337182846	1.02050427813177	142	Geranylgeranyl pyrophosphate synthase	H	polyprenyl synthetase
182700	1.63127970262411	3.54030438651823	1.12845559770165	-	-	-	conserved within P. aerophilum
182701	1.44683026619938	3.42944370466086	1.11774566514407	1836	Predicted membrane protein	S	conserved hypothetical protein
182702	1.5625726655301	3.28292820799474	1.06588073446194	432	Uncharacterized conserved protein	S	conserved hypothetical protein
182703	1.39498993301805	3.21616341215748	1.07861749414204	-	-	-	hypothetical protein
182704	1.56278280863592	3.38614400258187	1.0898657563903	-	-	-	hypothetical protein
182705	1.70433300038763	3.83365574279596	1.13690925329601	-	-	-	hypothetical protein
182706	1.50236676964562	3.41141399147973	1.10611280529507	611	Thiamine monophosphate kinase	H	thiamine-monophosphate kinase part 2, authentic frameshift
182707	1.38135685032462	2.89460429819806	1.0187750012978	-	-	-	thiamine-monophosphate kinase part 1, authentic frameshift
182708	1.40541238011436	3.25960646015632	1.11958553324686	-	-	-	hypothetical protein
182709	1.45434121600729	3.19090994885278	1.08967133095973	120	Ribose 5-phosphate isomerase	G	ribose 5-phosphate isomerase
182710	1.46052323236035	3.12819741350086	1.0150978919734	517	FOG: CBS domain	R	conserved protein with 2 CBS domains
182711	1.34917409818839	2.86604955975751	1.00952031050838	2414	Aldehyde:ferredoxin oxidoreductase	C	aldehyde ferredoxin oxidoreductase (aor)
182712	1.56527854835795	3.51751920010521	1.08230756070802	-	-	-	conserved within P. aerophilum
182713	1.51451155541685	3.42448084344239	1.10400973246315	-	-	-	conserved within P. aerophilum part 1, authentic frameshift
182714	1.3691235690333	2.96913201325042	1.00447794037538	-	-	-	conserved within P. aerophilum part 2, authentic frameshift
182715	1.49885901240577	3.12202243335671	1.03878919300258	1433	Uncharacterized conserved protein	S	hypothetical protein
182716	1.60692359060747	3.63884720363543	1.13318589360798	-	-	-	conserved within P. aerophilum
182717	1.53034148272225	3.48558984899812	1.1496562462687	-	-	-	conserved within P. aerophilum
182718	1.70680894204461	3.55657410970316	1.1178928949756	1433	Uncharacterized conserved protein	S	hypothetical protein
182719	1.40915371048271	3.09566508019938	1.05285303656867	1052	Lactate dehydrogenase and related dehydrogenases	CHR	D-3-phosphoglycerate dehydrogenase (serA)
182720	1.47324172832938	3.27866901278322	1.07700326895185	1014	Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, gamma subunit	C	pyruvate ferredoxin oxidoreductase gamma subunit (porG)
182721	1.49121735766636	3.10686868096729	0.947265188164473	1144	Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, delta subunit	C	pyruvate ferredoxin oxidoreductase delta subunit (porD)
182722	1.39742275901891	2.98523160861377	1.06403630005434	674	Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, alpha subunit	C	pyruvate ferredoxin oxidoreductase alpha subunit (porA)
182723	1.39882748237826	3.01977351356619	1.06374800527613	1013	Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, beta subunit	C	pyruvate ferredoxin oxidoreductase beta subunit (porB)
182724	1.35662536997615	2.99471668147213	1.06389799494271	-	-	-	hypothetical protein
182725	1.44695193139498	2.88752233537538	1.03254920418196	-	-	-	hypothetical protein
182726	1.36931271656001	2.97642313165636	1.03860612395305	1449	Alpha-amylase/alpha-mannosidase	G	hypothetical protein
182727	1.40479156464254	3.41891312843402	1.19180672923175	477	Permeases of the major facilitator superfamily	GEPR	hypothetical protein
182728	1.38606882947262	3.06662466023851	1.06970385477813	31	Cysteine synthase	E	cysteine synthase
182729	1.40300287754278	3.21153061334665	1.09054128996272	-	-	-	hypothetical protein
182730	1.40054542190212	3.08933971463759	1.02715175754562	476	Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2	H	thiF/moeB/hesA family protein
182731	1.42026226844647	3.06021227006252	1.06005044149515	584	Glycerophosphoryl diester phosphodiesterase	C	glycerophosphoryl diester phosphodiesterase
182732	1.60540527006014	3.72059793204935	1.11159907639325	1195	Recombinational DNA repair ATPase (RecF pathway)	L	partial recF homolog
182733	1.4018371411084	3.36202834424214	1.16931067792487	4986	ABC-type anion transport system, duplicated permease component	P	sulfonate transport permease protein, putative
182734	1.35058234180495	3.0072255219861	1.0209557185632	1116	ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component	P	taurine(sulfate) transport ATP-binding protein, putative
182735	1.49708782237099	3.35888718628616	1.15446123823497	-	-	-	P. aerophilum family 59 protein
182736	1.54296116066611	3.62089396270858	1.15771115007261	-	-	-	P. aerophilum family 3 protein
182737	1.42981126270391	3.10330889824063	1.03666917054836	4754	Uncharacterized conserved protein	S	hypothetical protein
182738	1.47639909604833	3.06836577898002	1.06525758309428	361	Translation initiation factor 1 (IF-1)	J	translation initiation factor aIF-1A
182739	1.54952354030821	3.37940935379808	1.10063630977438	-	-	-	hypothetical protein
182740	1.55217526070277	3.27641405264108	1.07064853068366	-	-	-	hypothetical protein
182741	1.43908835653799	3.03354211379349	1.03924203190032	-	-	-	paREP2b
182742	1.34828371844865	2.95361892146184	1.01690132613931	675	Transposase and inactivated derivatives	L	hypothetical protein
182743	1.4929636152653	3.32296162850091	1.15202513297341	-	-	-	P. aerophilum family 66 protein
182744	1.60404529495437	3.86666248965218	1.19008978356919	-	-	-	P. aerophilum family 79 protein
182745	1.40882399415629	3.21058929195019	1.12970766529876	-	-	-	P. aerophilum family 68 protein
182746	1.42329539139891	3.49813777049306	1.10296718186366	-	-	-	P. aerophilum family 70 protein
182747	1.42380374961529	3.16489058950493	1.05785775049416	1533	DNA repair photolyase	L	conserved hypothetical protein
182748	1.40870386166191	3.04393318807689	1.06207283682581	467	RecA-superfamily ATPases implicated in signal transduction	T	conserved hypothetical protein
182749	1.48680122667766	3.26628650338834	1.06137367546049	-	-	-	hypothetical protein
182750	1.41174413089588	3.06782674776951	1.07816347053232	2129	Predicted phosphoesterases, related to the Icc protein	R	conserved hypothetical protein
182751	1.4858974475928	3.33697082345539	1.1473931097467	-	-	-	P. aerophilum family 59 protein
182752	1.43774323589436	3.58548014805862	1.11314652112635	-	-	-	P. aerophilum family 3 protein
182753	1.52121212687472	3.48911530477956	1.18663543274946	-	-	-	P. aerophilum family 66 protein
182754	1.44666759346368	3.59782452803393	1.13226248501222	-	-	-	P. aerophilum family 79 protein
182755	1.48916605742127	3.32475691704619	1.0970174195131	705	Uncharacterized membrane protein (homolog of Drosophila rhomboid)	R	integral membrane protein (rhomboid related), putative
182756	1.52645061015171	3.31385096957922	1.07034645806898	-	-	-	hypothetical protein
182757	1.65015330468743	3.91420285163554	1.16676418055343	-	-	-	hypothetical protein
182758	1.46863562362545	3.21777157803146	1.04807705408705	640	Predicted transcriptional regulators	K	P. aerophilum family 453, possible regulatory protein
182759	1.42821555492496	3.24884949058654	1.10786381881573	1585	Membrane protein implicated in regulation of membrane protease activity	OU	conserved hypothetical protein
182760	1.53013417245353	3.54537690169036	1.17796067449627	500	SAM-dependent methyltransferases	QR	conserved hypothetical protein
182761	1.37422600660798	2.91426501370289	1.04119162664335	495	Leucyl-tRNA synthetase	J	leucyl-tRNA synthetase
182762	1.41516676613055	3.13417779157295	1.12631632693026	1110	Reverse gyrase	L	reverse gyrase
182763	1.3087585362968	2.71673957663031	0.90356183590332	-	-	-	hypothetical protein
182764	1.44859723200342	3.09767696795819	1.03412555048774	2110	Predicted phosphatase homologous to the C-terminal domain of histone macroH2A1	R	conserved hypothetical protein
182765	1.40070039576078	3.06036597090418	1.0513164013238	1032	Fe-S oxidoreductase	C	hypothetical protein
182766	1.38261439949149	2.99441945038531	1.02128582811143	417	DNA polymerase elongation subunit (family B)	L	possible DNA-directed DNA polymerase (B2)
182767	1.46424452392063	3.36655285109409	1.09343113110626	-	-	-	hypothetical protein
182768	1.2523136102221	2.8966664419396	1.15040682101328	-	-	-	hypothetical protein
182769	1.40284373120566	3.00057530441103	0.963716666265425	-	-	-	paREP1, authentic frameshift
182770	1.37802672548878	3.06304158249062	1.06169444515471	1672	Predicted ATPase (AAA+ superfamily)	R	conserved hypothetical protein
182771	1.49909300950366	3.33268582280223	1.12803613524236	705	Uncharacterized membrane protein (homolog of Drosophila rhomboid)	R	integral membrane protein (rhomboid related), putative
182772	1.38185279798924	3.0910544809424	1.03797662363157	-	-	-	hypothetical protein
182773	1.47258151603103	3.28001614719554	1.12270287339087	667	Predicted oxidoreductases (related to aryl-alcohol dehydrogenases)	C	conserved hypothetical protein
182774	1.45286233910534	3.33938170660887	1.1627267988791	2245	Predicted membrane protein	S	conserved hypothetical protein
182775	1.38188047338171	3.08792850523922	1.03858526176449	-	-	-	hypothetical protein
182776	1.35541741292469	2.90864974888935	1.01473849375399	446	Uncharacterized NAD(FAD)-dependent dehydrogenases	R	flavoprotein reductase, conjectural
182777	1.38411064694647	3.32507570635072	1.13483917760004	-	-	-	hypothetical protein
182778	1.43467070516905	3.25151701542111	1.11012944224193	1798	Diphthamide biosynthesis methyltransferase	J	diphthine synthase (dph5)
182779	1.53030330412374	3.41966755761669	1.09940410447974	-	-	-	hypothetical protein
182780	1.40029584486559	3.02488289503814	1.03449178995402	-	-	-	hypothetical protein
182781	1.4877984914366	3.31271873347514	1.10209459670866	101	Pseudouridylate synthase	J	tRNA pseudouridine synthase A
182782	1.50103785882419	3.33228410768315	1.12616646115457	454	Histone acetyltransferase HPA2 and related acetyltransferases	KR	conserved protein (acetyltransferase)
182783	1.5500549552183	3.11537064356691	1.03090085429362	-	-	-	hypothetical protein
182784	1.46041255173023	3.29207676734745	1.15296294270573	2084	3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases	I	conserved protein (3-hydroxyisobutyrate dehydrogenase family)
182785	1.3985182814718	3.05225322897251	1.0454617453183	1156	Archaeal/vacuolar-type H+-ATPase subunit B	C	H+-transporting ATP synthase subunit B (atpB)
182786	1.45015204197056	2.89341052436665	0.994913154035756	-	-	-	conserved hypothetical protein
182787	1.43924951583708	3.25796922902787	1.03755858079401	-	-	-	hypothetical protein
182788	1.57267350660441	3.45593228816726	1.13436198490784	1708	Predicted nucleotidyltransferases	R	conserved hypothetical protein
182789	1.40716519939665	3.12175873773144	1.05205005016453	2250	Uncharacterized conserved protein related to C-terminal domain of eukaryotic chaperone, SACSIN	S	conserved hypothetical protein
182790	1.37174491475831	2.9284860369475	0.969695670551008	467	RecA-superfamily ATPases implicated in signal transduction	T	conserved hypothetical protein
182791	1.42447593469852	3.22583587197617	1.10629066459237	11	Uncharacterized conserved protein	S	conserved hypothetical protein
182792	1.31428882570981	2.77974923450675	0.946988841561987	1694	Predicted pyrophosphatase	R	hypothetical protein
182793	1.42875250746067	2.99489706244946	1.07357700073425	1716	FOG: FHA domain	T	hypothetical protein with conserved Forkhead-associated (FHA) domain
182794	1.257717547109	2.85053814819628	1.04657433870137	-	-	-	hypothetical protein
182795	1.30466433992967	2.80667786167388	0.972526827741333	1060	Thiamine biosynthesis enzyme ThiH and related uncharacterized enzymes	HR	conserved hypothetical protein
182796	1.41731471418024	3.00972741367921	1.04595465963055	1060	Thiamine biosynthesis enzyme ThiH and related uncharacterized enzymes	HR	conserved hypothetical protein
182797	1.40550195232416	3.17381305470999	1.09205092935564	500	SAM-dependent methyltransferases	QR	hypothetical protein
182798	1.41914158100573	3.11329002892233	1.02362911538593	1427	Predicted periplasmic solute-binding protein	R	conserved hypothetical protein
182799	1.36532067219409	2.99781315670555	1.05775253532929	1131	ABC-type multidrug transport system, ATPase component	V	ABC transporter ATP-binding protein, putative
182800	1.38720544825994	3.4045270397816	1.16176726720826	1668	ABC-type Na+ efflux pump, permease component	CP	conserved hypothetical protein
182801	1.40221223829342	3.11928471835977	1.07677212660421	2407	L-fucose isomerase and related proteins	G	conserved hypothetical protein
182802	1.41992844081835	3.0453466124676	1.03879633482117	1052	Lactate dehydrogenase and related dehydrogenases	CHR	2-hydroxyacid dehydrogenase
182803	1.56505885380304	3.31427923680523	1.03186069155385	-	-	-	hypothetical protein
182804	1.37765988566498	2.93641502094689	1.01508407903366	-	-	-	hypothetical protein
182805	1.60134228192034	3.55317026298557	1.08563277809175	-	-	-	paREP2b
182806	1.49115694549194	3.2160563311904	1.11417490711852	-	-	-	paREP2b
182807	1.49372603602151	3.06290432014865	1.01948364023286	-	-	-	paREP2a
182808	1.48404471399503	3.20798762036863	1.070265262908	98	Ribosomal protein S5	J	ribosomal protein S5
182809	1.4258228207743	3.17795869942596	1.08607985567903	1841	Ribosomal protein L30/L7E	J	ribosomal protein L30
182810	1.39065386731077	2.99215020054923	1.03468787405628	1085	Galactose-1-phosphate uridylyltransferase	C	galactose-1-phosphate uridylyltransferase
182811	1.46610397741273	3.27225228776484	1.13067140085551	153	Galactokinase	G	galactokinase
182812	1.41356213533907	3.34548635313331	1.15133047525175	1994	Zn-dependent proteases	R	conserved hypothetical protein
182813	1.60169052067611	3.47530515554776	1.12204106061555	-	-	-	hypothetical protein
182814	1.37792281551981	2.97909331446761	1.05688632165272	1506	Dipeptidyl aminopeptidases/acylaminoacyl-peptidases	E	acylamino-acid-releasing enzyme, conjectural
182815	1.48648826190281	3.04664720052525	1.00839245812201	-	-	-	paREP2b
182816	1.45107952078437	3.03276527248025	1.14786761873179	-	-	-	hypothetical protein
182817	1.38427533050996	3.00285247652146	1.00659917494434	-	-	-	hypothetical protein
182818	1.58261969203688	3.48893479136525	1.12012599083865	-	-	-	hypothetical protein
182819	1.49907920169005	3.70781820742777	1.1788589689298	-	-	-	hypothetical protein
182820	1.50109289263707	3.32720190160129	0.970355237554679	1131	ABC-type multidrug transport system, ATPase component	V	ABC transporter ATP-binding protein, putative
182821	1.6864329815349	3.94647916794348	1.13747781049666	-	-	-	hypothetical protein
182822	1.45200540290104	2.92248163443191	0.996355370121187	-	-	-	paREP2a
182823	1.45960603402484	3.14112726344297	1.05339237635637	421	Spermidine synthase	E	spermidine synthase
182824	1.40656817606608	3.15274436909154	1.11082209393978	452	Phosphopantothenoylcysteine synthetase/decarboxylase	H	pantothenate metabolism flavoprotein (dfp)
182825	1.40323520311515	3.18569638986087	1.04957813284002	2522	Predicted transcriptional regulator	R	hypothetical protein
182826	1.35792312652322	2.86199257725884	1.001796359174	-	-	-	hypothetical protein
182827	1.39006401281767	2.9608905785585	1.03377063446584	1640	4-alpha-glucanotransferase	G	4-alpha-glucanotransferase (malQ)
182828	1.33784666149001	2.82424265298685	0.965267768956157	-	-	-	paREP2a
182829	1.43007750192476	2.89592097738969	0.985345581858517	-	-	-	paREP2a
182830	1.45262387573607	3.13858954245409	1.03250032487036	-	-	-	paREP2b
182831	1.47596252456158	3.167776853571	1.09684007269805	-	-	-	paREP2b
182832	1.58057879682271	3.37073131267524	1.12075389019719	164	Ribonuclease HII	L	ribonuclease HII (rnhB)
182833	1.34351564113719	3.0270640178241	1.05181920865152	1695	Predicted transcriptional regulators	K	conserved hypothetical protein
182834	1.47517302611285	3.2611571958907	1.10122993613725	171	NAD synthase	H	NH(3)-dependent NAD(+) synthetase
182835	1.33890759797613	2.94358083255005	1.02639295515009	183	Acetyl-CoA acetyltransferase	I	acetyl-CoA C-acetyltransferase
182836	1.38463258095662	3.02820229223139	1.0584628666733	3839	ABC-type sugar transport systems, ATPase components	G	ABC transporter ATP-binding protein, putative
182837	1.41424187724512	3.10703845969031	1.08807199122014	-	-	-	hypothetical protein
182838	1.48495465719755	3.26494647524259	1.07818629264004	500	SAM-dependent methyltransferases	QR	conserved hypothetical protein
182839	1.42778095251193	3.1562021255965	1.09789121664485	1502	Phosphatidylserine/phosphatidylglycerophosphate/cardiolipin synthases and related enzymes	I	DNA endonuclease, conjectural
182840	1.39097157412143	3.18891098259136	1.10325402830421	1846	Transcriptional regulators	K	conserved hypothetical protein
182841	1.49302520822666	3.24509351633554	1.11393393881751	274	Deoxyribose-phosphate aldolase	F	deoxyribose-phosphate aldolase
182842	1.48192784225413	2.97413112142829	1.02593546581421	1254	Acylphosphatases	C	acylphosphatase, putative
182843	1.40281067305768	2.88881765989366	0.991977155494967	4353	Uncharacterized conserved protein	S	conserved hypothetical protein
182844	1.39685060181172	3.17899292785959	1.07521433407495	-	-	-	conserved within P. aerophilum
182845	1.34967928709817	3.59811790464431	1.19709943946276	-	-	-	hypothetical protein
182846	1.31271348876863	2.83903891822848	1.07133066487255	-	-	-	hypothetical protein
182847	1.39847904195683	3.03267725203934	1.07284042661014	189	Glutathione synthase/Ribosomal protein S6 modification enzyme (glutaminyl transferase)	HJ	ribosomal protein S6 modification protein (rimK)
182848	1.35348541138468	2.84038032969176	0.939097501273278	4911	Uncharacterized conserved protein	S	conserved hypothetical protein
182849	1.47449556634142	3.08538758232339	0.99372392565067	-	-	-	hypothetical protein
182850	1.44371536523926	3.31125545517118	1.15353795952241	1184	Translation initiation factor 2B subunit, eIF-2B alpha/beta/delta family	J	translation initiation factor aIF-2B subunit, conjectural
182851	1.43903296815495	3.19139312141681	1.08139044317358	1121	ABC-type Mn/Zn transport systems, ATPase component	P	manganese ABC transporter ATP-binding protein
182852	1.42034861019532	3.61184762775153	1.25220887751366	1108	ABC-type Mn2+/Zn2+ transport systems, permease components	P	manganese transport permease protein
182853	1.33352027206466	3.03999304126767	1.05666492351532	1196	Chromosome segregation ATPases	D	hypothetical protein
182854	1.43336014371622	3.09591123316246	1.06205645427414	535	Predicted Fe-S oxidoreductases	R	conserved hypothetical protein
182855	1.46681699907942	3.1983333850061	1.06312008764029	1672	Predicted ATPase (AAA+ superfamily)	R	conserved hypothetical protein, degenerate
182856	1.45937714485732	3.41202432914941	1.12787633894565	4904	Uncharacterized protein conserved in archaea	S	hypothetical protein
182857	1.55910527448455	3.5296957361151	1.00604279647621	-	-	-	conserved hypothetical protein
182858	1.50211254439829	3.20176403144952	1.00958462879296	437	Fe-S-cluster-containing hydrogenase components 1	C	molybdopterin oxidoreductase, iron-sulfur binding subunit
182859	1.47492560506989	3.56849606005892	1.17487481601784	4881	Predicted membrane protein	S	conserved hypothetical protein
182860	1.47433970023172	3.09414667099069	1.07307442582412	243	Anaerobic dehydrogenases, typically selenocysteine-containing	C	molybdopterin oxidoreductase, molybdopterin binding subunit
182861	1.37892560916037	3.39524095389421	1.16415685356217	1280	Putative threonine efflux protein	E	conserved hypothetical protein
182862	1.40164834186386	3.14545695980102	1.09559367815433	1373	Predicted ATPase (AAA+ superfamily)	R	conserved hypothetical protein
182863	1.45507535460028	3.25739710098993	1.13451882424065	1602	Uncharacterized conserved protein	S	conserved hypothetical protein
182864	1.51118415276637	3.44402666508148	1.11420228868227	668	Small-conductance mechanosensitive channel	M	conserved hypothetical protein
182865	1.48372092535721	3.20651228593396	1.09635106735752	-	-	-	P. aerophilum family 1964 protein
182866	1.5598344053026	3.41521645705132	1.13398582573919	380	Trehalose-6-phosphate synthase	G	trehalose-6-phosphate synthase
182867	1.55461464698816	3.41673597460873	1.1282743630912	438	Glycosyltransferase	M	glycosyl transferase, conjectural
182868	1.7083387612442	3.92344336524987	1.09417096364304	-	-	-	conserved within P. aerophilum
182869	1.59080936066546	3.45059699074134	1.09317076646536	-	-	-	conserved hypothetical protein
182870	1.54333431956749	3.28704795862014	1.07034862068429	438	Glycosyltransferase	M	trehalose synthase
182871	1.49353401939919	3.21884376669017	1.0895764596571	561	Predicted hydrolases of the HAD superfamily	R	hypothetical protein
182872	1.44981328952462	3.23061557454543	1.09665628350842	247	Fe-S oxidoreductase	C	conserved hypothetical protein
182873	1.41139625630825	3.01949425379626	0.98709382731004	247	Fe-S oxidoreductase	C	glycolate oxidase subunit, putative
182874	1.42207885205353	3.13895402045571	1.09677295264447	247	Fe-S oxidoreductase	C	glycolate oxidase subunit glcF
182875	1.40111120868901	3.10661982689973	1.01615229965156	277	FAD/FMN-containing dehydrogenases	C	glycolate oxidase subunit glcE
182876	1.36134238315082	2.93110486991936	1.03230281667423	277	FAD/FMN-containing dehydrogenases	C	glycolate oxidase subunit glcD
182877	1.35661375865574	2.92036852030977	1.04020204133639	2225	Malate synthase	C	malate synthase (glcB)
182878	1.43160634598292	3.22557121251925	1.09068479048981	247	Fe-S oxidoreductase	C	conserved hypothetical protein
182879	1.53398750140024	3.2308909110572	1.10617352038301	1139	Uncharacterized conserved protein containing a ferredoxin-like domain	C	conserved hypothetical protein
182880	1.67968780242615	3.97978114854597	1.1341564991887	530	Ca2+/Na+ antiporter	P	conserved within P. aerophilum part 2, authentic frameshift
182881	1.62943512599536	4.02299175913318	1.18619022785279	-	-	-	conserved within P. aerophilum part 1, authentic frameshift
182882	1.64296091844713	3.83415316833409	1.15875088357912	-	-	-	conserved hypothetical protein
182883	1.43096023968992	3.07685515999271	1.05546499207529	1853	Conserved protein/domain typically associated with flavoprotein oxygenases, DIM6/NTAB family	R	conserved hypothetical protein
182884	1.3995432126493	3.14105674342462	1.11321684662363	4608	ABC-type oligopeptide transport system, ATPase component	E	dipeptide transport ATP-binding protein
182885	1.4311308830815	3.09674265299536	1.05541915341977	444	ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component	EP	dipeptide transport ATP-binding protein
182886	1.62915941104312	3.79034449826033	1.172865264638	1173	ABC-type dipeptide/oligopeptide/nickel transport systems, permease components	EP	dipeptide ABC transporter, permease protein
182887	1.60823930534234	3.75438991305875	1.0941065772427	601	ABC-type dipeptide/oligopeptide/nickel transport systems, permease components	EP	dipeptide ABC transporter, permease protein
182888	1.61920976229457	3.51900713420178	1.0644510956597	747	ABC-type dipeptide transport system, periplasmic component	E	dipeptide binding protein
182889	1.39845624379997	2.96556271628925	1.0571576198813	4946	Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system	S	tricorn protease
182890	1.37643453241007	3.36801941612633	1.15115018144731	4243	Predicted membrane protein	S	hypothetical protein
182891	1.44256257253094	3.13173565789195	1.05909866129812	3427	Uncharacterized conserved protein	S	conserved hypothetical protein
182892	1.39810284467208	3.1829139749569	1.10208694343429	1672	Predicted ATPase (AAA+ superfamily)	R	conserved hypothetical protein
182893	1.48675099306055	3.14860385130602	1.06752108041979	-	-	-	hypothetical protein
182894	1.41174012239235	3.1629372047178	1.09274828656814	2379	Putative glycerate kinase	G	conserved hypothetical protein
182895	1.47239218957151	3.19889766016282	1.01768702863621	2250	Uncharacterized conserved protein related to C-terminal domain of eukaryotic chaperone, SACSIN	S	conserved hypothetical protein
182896	1.38644394888788	2.94086108766859	1.08055365386503	1708	Predicted nucleotidyltransferases	R	conserved within P. aerophilum part 1, authentic frameshift
182897	1.34885668610358	2.93881654985836	1.14047141219322	1708	Predicted nucleotidyltransferases	R	conserved within P. aerophilum part 2, authentic frameshift
182898	1.48495393098393	3.26516523733488	1.08568726102609	517	FOG: CBS domain	R	conserved protein with 2 CBS domains
182899	1.41538553383245	3.6502122802458	1.12905155572781	-	-	-	conserved hypothetical protein
182900	1.50916657061844	3.83649123937777	1.16301980275123	-	-	-	hypothetical protein
182901	1.60032946549354	3.51082858852638	1.10834200248433	2250	Uncharacterized conserved protein related to C-terminal domain of eukaryotic chaperone, SACSIN	S	conserved hypothetical protein, authentic frameshift
182902	1.43833852774315	2.9061338901099	1.01573691396602	1708	Predicted nucleotidyltransferases	R	conserved hypothetical protein
182903	1.45640511964686	3.18072963655212	1.07165786772371	3839	ABC-type sugar transport systems, ATPase components	G	multiple sugar-binding transport ATP-binding
182904	1.52676161730201	3.67620041025978	1.15942031742267	395	ABC-type sugar transport system, permease component	G	multiple sugar transport permease
182905	1.59846146656172	3.59476764045932	1.13798806568166	1175	ABC-type sugar transport systems, permease components	G	multiple sugar transport permease
182906	1.53601869762246	3.36812488111801	1.07683053332152	1653	ABC-type sugar transport system, periplasmic component	G	multiple sugar binding protein
182907	1.52304933501106	3.65672132174346	1.12224403253303	-	-	-	hypothetical protein
182908	1.98340822897551	4.37844226240527	1.11725471433183	-	-	-	hypothetical protein
182909	1.42605212511303	3.1972025451535	1.10576173405557	1573	Uracil-DNA glycosylase	L	uracil-DNA glycosylase (Pa-UDGb)
182910	1.364974666428	3.49012805715575	1.18425784732385	697	Permeases of the drug/metabolite transporter (DMT) superfamily	GER	conserved hypothetical protein
182911	1.42712332583098	3.10250558456809	1.06582968636509	2050	Uncharacterized protein, possibly involved in aromatic compounds catabolism	Q	conserved hypothetical protein
182912	1.3035583617635	2.82873062658495	0.981580856953899	119	Isopropylmalate/homocitrate/citramalate synthases	E	2-isopropylmalate synthase (leuA)
182913	1.59194399743801	3.35466235275734	1.00589944551328	247	Fe-S oxidoreductase	C	conserved iron-sulfur protein
182914	1.45505582108166	3.22730776337776	1.09826107534633	2847	Uncharacterized protein conserved in bacteria	S	conserved hypothetical protein
182915	1.38529079953471	3.39443680174632	1.14776104451428	109	Polyprenyltransferase (cytochrome oxidase assembly factor)	O	cytochrome C oxidase assembly factor
182916	1.45239452079123	3.69595354569262	1.20439724734364	-	-	-	possible respiratory chain protein
182917	1.50830419297481	3.49268808941113	1.15951537740348	-	-	-	possible respiratory chain protein
182918	1.36118883676444	3.16301355529025	1.11081139140281	843	Heme/copper-type cytochrome/quinol oxidases, subunit 1	C	cytochrome C oxidase subunit I /III
182919	1.44165089528158	3.07161210790083	1.02490510296563	1622	Heme/copper-type cytochrome/quinol oxidases, subunit 2	C	cytochrome C oxidase subunit II
182920	1.39356666988495	3.21382866461352	1.09125967074481	-	-	-	respiratory chain protein (soxI homolog)
182921	1.43253831689002	3.53112849462717	1.1582747835671	-	-	-	possible respiratory chain protein
182922	1.41289597157988	3.36174869103417	1.18130850641751	-	-	-	hypothetical protein
182923	1.4322156785489	3.34759973006481	1.12949589468651	-	-	-	conserved within P. aerophilum
182924	1.37536012242183	2.95295432027589	1.01340638839842	723	Rieske Fe-S protein	C	Rieske iron sulfur protein (parR)
182925	1.33504801512529	3.13288803549345	1.08676878482097	1290	Cytochrome b subunit of the bc complex	C	cytochrome b/b6
182926	1.3864624283393	3.23133511025181	1.10133400023062	-	-	-	hypothetical protein
182927	1.35064625153958	3.20847562982907	1.10665997499057	-	-	-	hypothetical protein
182928	1.4289100799002	2.99789062522232	1.03965114761437	1622	Heme/copper-type cytochrome/quinol oxidases, subunit 2	C	cytochrome C oxidase subunit II
182929	1.36773027253446	3.2351382842057	1.1409101142446	843	Heme/copper-type cytochrome/quinol oxidases, subunit 1	C	cytochrome C oxidase subunit I
182930	1.41355557706639	3.17524330960936	1.08618225574526	1999	Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic sys	R	senC homolog
182931	1.40930311600024	3.36387085781908	1.16116692656097	-	-	-	hypothetical protein
182932	1.33769328476264	2.88885227854571	1.0060333830897	-	-	-	hypothetical protein
182933	1.46722184900564	3.12119599194332	1.0701446939162	-	-	-	hypothetical protein
182934	1.4271554113083	3.2042825568252	1.11831582045302	3420	Nitrous oxidase accessory protein	P	nosD homolog
182935	1.4516515962112	3.37135414161242	1.15001610648904	3842	ABC-type spermidine/putrescine transport systems, ATPase components	E	branched-chain amino acid ABC transporter, ATP-binding protein, putative
182936	1.41334759487222	3.63517921226824	1.19327865529236	-	-	-	hypothetical protein
182937	1.38271090684745	3.48135760742228	1.14549057602398	-	-	-	hypothetical protein
182938	1.40938256802372	3.15616604148108	1.08221150647584	1846	Transcriptional regulators	K	conserved hypothetical protein
182939	1.51853190310233	3.89204536671917	1.23851008988236	697	Permeases of the drug/metabolite transporter (DMT) superfamily	GER	conserved hypothetical protein part 1, authentic frameshift
182940	1.35297770124906	3.28995817505549	1.11365852318736	697	Permeases of the drug/metabolite transporter (DMT) superfamily	GER	conserved hypothetical protein part 2, authentic frameshift
182941	1.45201630681967	3.16547926964788	1.08022083104461	2107	Predicted periplasmic solute-binding protein	R	conserved hypothetical protein
182942	1.36514341198041	2.95961180731189	1.06047484413947	1444	Predicted P-loop ATPase fused to an acetyltransferase	R	conserved hypothetical protein
182943	1.45881301050378	3.77138005868123	1.25290121354032	697	Permeases of the drug/metabolite transporter (DMT) superfamily	GER	conserved hypothetical protein
182944	1.34001865418494	2.83730217585299	0.988309638020153	1601	Translation initiation factor 2, beta subunit (eIF-2beta)/eIF-5 N-terminal domain	J	translation initiation factor aIF-2B beta subunit
182945	1.41469441112138	3.09906332054623	1.04546459136745	1545	Predicted nucleic-acid-binding protein containing a Zn-ribbon	R	conserved protein associated with acetyl-CoA C-acyltransferase
182946	1.46571597071916	3.13194348628135	1.07164642318129	183	Acetyl-CoA acetyltransferase	I	acetyl-CoA C-acyltransferase
182947	1.34752467140205	2.79951289460838	0.955173995358459	1960	Acyl-CoA dehydrogenases	I	acyl-CoA dehydrogenase
182948	1.42929198346176	3.04304809337751	1.07139966727408	318	Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II	IQ	long-chain-fatty-acid--CoA ligase
182949	1.49970754840833	3.30684519539821	1.12520147796851	656	Aldo/keto reductases, related to diketogulonate reductase	R	aldo-keto reductase family protein
182950	1.36436963831064	2.92289286213234	1.04790521195258	1024	Enoyl-CoA hydratase/carnithine racemase	I	3-hydroxyacyl-CoA dehydrogenase and enoyl-CoA hydratase
182951	1.43675348582263	3.04565572517267	1.06468797189199	1363	Cellulase M and related proteins	G	aminopeptidase from family M42
182952	1.49377137754976	3.22716606716922	1.05580048251472	704	Phosphate uptake regulator	P	phosphate transport system regulator, conjectural
182953	1.40401982758971	3.08181622368714	1.0616714849299	-	-	-	paREP1
182954	1.42760070349707	3.34194527555525	1.15469943923225	410	ABC-type branched-chain amino acid transport systems, ATPase component	E	branched-chain amino acid transport ATP-binding protein
182955	1.45059119797882	3.19309421530874	1.06933100283575	411	ABC-type branched-chain amino acid transport systems, ATPase component	E	branched-chain amino acid transport ATP-binding protein
182956	1.41089042385741	3.31773018569254	1.16903834511801	4177	ABC-type branched-chain amino acid transport system, permease component	E	branched-chain amino acid transport permease protein
182957	1.48771359281871	3.61028928174481	1.19726323453984	559	Branched-chain amino acid ABC-type transport system, permease components	E	branched-chain amino acid transport permease protein
182958	1.37583014256403	3.06587364685631	1.08925433063633	683	ABC-type branched-chain amino acid transport systems, periplasmic component	E	branched-chain amino acid binding protein
182959	1.43220871213426	3.22934156636964	1.09771926156225	1117	ABC-type phosphate transport system, ATPase component	P	phosphate ABC transporter, ATP-binding protein
182960	1.3304385028388	3.07293461505627	1.07532044842406	581	ABC-type phosphate transport system, permease component	P	phosphate ABC transporter, permease protein
182961	1.3960738730902	3.44719329397854	1.18042577335073	573	ABC-type phosphate transport system, permease component	P	phosphate ABC transporter, permease protein
182962	1.40091495918912	3.04200491434055	1.08694534076195	226	ABC-type phosphate transport system, periplasmic component	P	phosphate-binding periplasmic protein, putative
182963	1.40128517743924	3.00354468177701	1.06400644661059	-	-	-	hypothetical protein
182964	1.29802391689454	2.62557054367834	0.915241932617237	-	-	-	conserved hypothetical protein
182965	1.40661904985499	2.98310645349619	1.00095450067024	-	-	-	hypothetical protein
182966	1.35083057191523	2.88296236906601	1.02834340657973	-	-	-	conserved within P. aerophilum
182967	1.4273441680931	3.17942903346385	1.05754087176496	-	-	-	hypothetical protein
182968	1.42936403338987	3.48770072172752	1.13048091537597	-	-	-	hypothetical protein
182969	1.47026401781095	3.54271695708862	1.15596703719291	-	-	-	hypothetical protein
182970	1.67669987173082	3.4516974638724	1.1080663417471	-	-	-	paREP6, authentic frameshift
182971	1.46931966222986	3.61939990448156	1.19302642202673	-	-	-	hypothetical protein
182972	1.54695112309794	3.54969030366349	1.08110245196344	-	-	-	hypothetical protein
182973	1.6111629709458	3.27320707493273	0.928074896249897	-	-	-	hypothetical protein
182974	1.69092061641123	3.64849836824161	1.09786873327003	-	-	-	hypothetical protein
182975	1.52074766482733	3.68575407101711	1.16412230834972	-	-	-	hypothetical protein
182976	1.48177455164385	3.39475654824869	1.06758356856621	-	-	-	hypothetical protein
182977	1.51578866808271	3.62180914515648	1.21939976723516	1966	Carbon starvation protein, predicted membrane protein	T	carbon starvation protein A homolog
182978	1.39136795949111	3.0397935107819	1.02415033305525	-	-	-	hypothetical protein
182979	1.67191096165914	3.75442045826597	1.11161332161591	3	Oxyanion-translocating ATPase	P	arsenical pump-driving ATPase
182980	1.47564173551058	3.05142857827923	1.14561186994905	-	-	-	hypothetical protein
182981	1.37230051873641	3.36672902697859	1.07680247044667	-	-	-	conserved within P. aerophilum
182982	1.71232471541982	3.89707486425966	1.1201774163354	-	-	-	P. aerophilum family 321 protein
182983	1.47145064251887	3.51112251297135	1.18379081257205	1266	Predicted metal-dependent membrane protease	R	P. aerophilum family 322 protein part 1, authentic frameshift
182984	1.43284088317767	3.41405339026109	1.13214736918666	1266	Predicted metal-dependent membrane protease	R	P. aerophilum family 322 protein part 2, authentic frameshift
182985	1.31003240699752	2.89377199541655	0.980589921397488	-	-	-	hypothetical protein
182986	1.60653932140324	3.50772020218944	1.10693890675456	-	-	-	paREP10
182987	1.60101156362113	3.59990329975561	1.08706140239458	-	-	-	hypothetical protein
182988	1.43977954874641	3.11404929159873	1.0629516971035	1056	Nicotinamide mononucleotide adenylyltransferase	H	cytidylyltransferase
182989	1.41356042664034	3.04873326754488	1.08340670204072	16	Phenylalanyl-tRNA synthetase alpha subunit	J	phenylalanyl-tRNA synthetase alpha subunit
182990	1.3447335895219	2.9598632212266	1.02586032355479	3609	Predicted transcriptional regulators containing the CopG/Arc/MetJ DNA-binding domain	K	conserved hypothetical protein
182991	1.36098829478866	2.96946437829639	0.996727606437788	-	-	-	hypothetical protein
182992	1.29305916099269	2.83388488637563	1.00681705238893	4046	Uncharacterized protein conserved in archaea	S	conserved hypothetical protein
182993	1.43167775891298	3.16298219867514	1.08670454846277	-	-	-	hypothetical protein
182994	1.38592994257211	3.49160982134413	1.14772989801394	-	-	-	hypothetical protein
182995	1.36308073352835	3.04602103075912	1.0742639675124	1196	Chromosome segregation ATPases	D	hypothetical protein
182996	1.39873696203232	3.04117484556957	1.03518177331986	-	-	-	hypothetical protein
182997	1.27353646904101	2.62100166273116	1.03113132834823	-	-	-	paREP2a
182998	1.80987594090051	3.81167445322813	1.15840363137286	-	-	-	paREP2a
182999	1.39962681635599	3.09859679114703	1.09508884030694	-	-	-	paREP9, associated with SRSRs, authentic frameshift
183000	1.61293560269433	3.77462822898467	1.16287378625252	-	-	-	hypothetical protein
183001	1.40708059243461	3.0208652967085	1.06367851448167	-	-	-	hypothetical protein
183002	1.2264364795847	2.65843544407185	0.993965144126128	1673	Uncharacterized protein conserved in archaea	S	conserved hypothetical protein, part 1 authentic frameshift
183003	1.34563891900741	2.90503617963423	1.04185449773201	1673	Uncharacterized protein conserved in archaea	S	conserved hypothetical protein, part 2 authentic frameshift
183004	1.34053423372987	2.72795879681453	1.02880976744446	-	-	-	conserved within P. aerophilum
183005	1.46818146709253	3.05821928387205	1.06254537538402	110	Acetyltransferase (isoleucine patch superfamily)	R	acetyl/acyl transferase related protein
183006	1.33563832294046	2.84214711973643	1.00121324466071	1363	Cellulase M and related proteins	G	aminopeptidase from family M42
183007	1.35342178440511	2.92566091029609	1.02723950869484	2820	Uridine phosphorylase	F	purine nucleoside phosphorylase
183008	1.52301498352707	3.34896205974026	1.12040938594663	-	-	-	hypothetical protein
183009	1.46741053857941	3.67866399704125	1.23037685916226	2431	Predicted membrane protein	S	conserved hypothetical protein
183010	1.76584985021725	3.9833328668361	1.19515094464044	-	-	-	paREP10
183011	1.41455678052294	3.21628430589633	1.12273712008884	163	3-polyprenyl-4-hydroxybenzoate decarboxylase	H	phenylacrylic acid decarboxylase homolog
183012	1.40464427921704	3.1623287588182	1.07772130253356	-	-	-	hypothetical protein
183013	1.434698101053	3.21630168965706	1.09065869361795	3609	Predicted transcriptional regulators containing the CopG/Arc/MetJ DNA-binding domain	K	conserved hypothetical protein
183014	1.43031629701754	3.00982853899028	1.02430148275172	2520	Predicted methyltransferase	R	conserved hypothetical protein
183015	1.46031177430545	3.21248829835716	1.0856402726235	4755	Uncharacterized protein conserved in archaea	S	conserved hypothetical protein
183016	1.39545473307601	3.08128190798934	1.06672242444021	794	Predicted sugar phosphate isomerase involved in capsule formation	M	conserved protein with sugar isomerase (SIS) domain
183017	1.43841450018481	3.03438847078528	1.02529550725971	1586	S-adenosylmethionine decarboxylase	E	conserved hypothetical protein
183018	1.47045163650695	3.23729755034596	1.08639955420637	-	-	-	hypothetical protein
183019	1.50410343131898	3.09767852390853	1.11981894008039	-	-	-	hypothetical protein
183020	1.38811406206974	3.02047283978123	1.08584265237281	1048	Aconitase A	C	aconitate hydratase
183021	1.49732218343954	3.92475900571089	1.19834061228412	-	-	-	conserved hypothetical protein
183022	1.48645629026976	3.29706965929431	1.12696935720104	149	Triosephosphate isomerase	G	triosephosphate isomerase (tpiA)
183023	1.47752276560093	3.06634921806254	1.06554643426801	-	-	-	hypothetical protein
183024	1.38553614476232	3.1150183481387	1.04828358100545	-	-	-	hypothetical protein
183025	1.35890734699456	2.92622102115999	1.00762962758444	2125	Ribosomal protein S6E (S10)	J	ribosomal protein S6
183026	1.37864141277985	3.00067967246332	1.0354652707341	1522	Transcriptional regulators	K	transcriptional regulatory protein, AsnC family
183027	1.4944980778296	3.36552117461848	1.13850068854524	-	-	-	hypothetical protein
183028	1.48371900747889	3.32396055040179	1.1293493436063	-	-	-	hypothetical protein
183029	1.66069918819456	3.66018296171655	1.10889789601745	-	-	-	hypothetical protein
183030	1.37871448481161	2.98771332256703	1.06373603694467	532	Translation initiation factor 2 (IF-2; GTPase)	J	translation initiation factor IF-2 (infB), putative
183031	1.44952597546153	3.09969071595049	1.00478542343479	-	-	-	paREP2b
183032	1.40074783328748	3.09308328098776	1.07320865124963	-	-	-	paREP8
183033	1.40360993151593	3.02687893804846	1.11132835116821	-	-	-	hypothetical protein
183034	1.38749768255388	3.18245662787704	1.07391146667031	-	-	-	hypothetical protein
183035	1.47456508149994	3.16931222301135	1.08112709669587	517	FOG: CBS domain	R	conserved protein with 2 CBS domains
183036	1.40124313323095	3.02338066789981	1.03790345860728	644	Dehydrogenases (flavoproteins)	C	conserved hypothetical protein
183037	1.48000912422278	3.59307379063164	1.18295485629525	-	-	-	hypothetical protein
183038	1.40201298935593	3.48070693768003	1.19935077150223	-	-	-	hypothetical protein
183039	1.40509109251375	3.03764943480846	1.03387565245599	2178	Predicted RNA-binding protein of the translin family	J	conserved hypothetical protein
183040	1.41209176939052	3.07650417316871	1.09066715350424	154	Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases	J	Glu-tRNA(Gln) amidotransferase subunit A (gatA)
183041	1.48938114937043	3.32514496663423	1.12648275382319	491	Zn-dependent hydrolases, including glyoxylases	R	conserved hypothetical protein
183042	1.58831332021656	3.54707085923586	1.18726480278093	-	-	-	hypothetical protein
183043	1.53760219505184	3.50945013438218	1.11131809000178	-	-	-	conserved within P. aerophilum, partially with both neighbors
183044	1.57090284358985	3.97524866492672	1.16240891180854	-	-	-	conserved within P. aerophilum
183045	1.45075738583658	3.2007968636408	1.09130331678735	-	-	-	hypothetical protein
183046	1.46285277692955	3.19831812306984	1.0717831340406	2453	Predicted protein-tyrosine phosphatase	T	conserved protein (possible dual specificity phosphatase)
183047	1.39587421954146	3.3142604387168	1.15492716035836	785	Cytochrome c biogenesis protein	O	hypothetical protein
183048	1.44108524317772	3.11279699586428	1.05828266668912	491	Zn-dependent hydrolases, including glyoxylases	R	conserved protein (possibly metallo-beta-lactamase superfamily)
183049	1.33605244734721	3.09330201837821	1.09722607208797	-	-	-	hypothetical protein
183050	1.50256580418161	3.2403280701375	1.11286510182489	665	Glycine/D-amino acid oxidases (deaminating)	E	conserved hypothetical protein
183051	1.68701953879838	3.76918924428966	1.15854173242737	3609	Predicted transcriptional regulators containing the CopG/Arc/MetJ DNA-binding domain	K	conserved hypothetical protein
183052	1.44812157703081	3.55237746279867	1.20309347248954	697	Permeases of the drug/metabolite transporter (DMT) superfamily	GER	conserved hypothetical protein
183053	1.59457658299692	3.45924210371373	1.04688838974123	1826	Sec-independent protein secretion pathway components	U	conserved hypothetical protein
183054	1.57113520572235	3.6662425131635	1.14716943317495	805	Sec-independent protein secretion pathway component TatC	U	membrane protein (mttB family)
183055	1.47216530267939	3.38838825635511	1.12560484323535	-	-	-	hypothetical protein
183056	1.43289192442414	3.17237913166553	1.07078915793033	-	-	-	hypothetical protein
183057	1.43022903331701	3.52753667222789	1.20281162473468	477	Permeases of the major facilitator superfamily	GEPR	transport protein, conjectural
183058	1.43277895943756	3.04483964716108	1.07177087283017	549	Carbamate kinase	E	carbamate kinase
183059	1.44408494311838	3.05977051877467	1.07085342984687	124	Histidyl-tRNA synthetase	J	histidyl-tRNA synthetase
183060	1.45835735091634	3.19340846372375	1.08384168881063	1748	Saccharopine dehydrogenase and related proteins	E	saccharopine dehydrogenase, conjectural
183061	1.41377394871081	3.2269228325801	1.12976769111084	463	Glycosyltransferases involved in cell wall biogenesis	M	dolichol-phosphate mannosyltransferase
183062	1.42562346931054	3.05031133836653	1.04484065951572	467	RecA-superfamily ATPases implicated in signal transduction	T	P. aerophilum family 417, putative ATP binding
183063	1.35910123225678	2.96425908112849	1.05056330508493	1013	Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, beta subunit	C	2-oxoacid ferredoxin oxidoreductase beta subunit
183064	1.45480039312256	3.16764269063962	1.12104951115371	674	Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, alpha subunit	C	2-oxoacid ferredoxin oxidoreductase alpha subunit
183065	1.4679311314831	3.30079804522495	1.08295106492521	-	-	-	hypothetical protein
183066	1.58336127206203	3.47978560046137	1.1043227562551	105	Nucleoside diphosphate kinase	F	nucleoside diphosphate kinase (ndk)
183067	1.53575759819746	3.30080698067165	1.12706021277176	-	-	-	paREP2a
183068	1.43362261896949	2.86912780571675	0.941195786774012	-	-	-	paREP2a
183069	1.45649359030647	3.10366213332384	1.10094417288189	-	-	-	paREP2b
183070	1.43498981166325	3.68032346120354	1.24891764566203	1007	NADH:ubiquinone oxidoreductase subunit 2 (chain N)	C	NADH-ubiquinone oxidoreductase subunit
183071	1.43069316596188	3.39167474636836	1.17717115391864	1009	NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit	CP	NADH-ubiquinone oxidoreductase subunit
183072	1.37670022282763	3.14408184808038	1.12742058358601	-	-	-	paREP2a
183073	1.35765890274137	2.86841050548966	0.971404222503027	-	-	-	paREP2a
183074	1.50430027618077	3.14722501918543	1.0096176449332	-	-	-	paREP2a
183075	1.44246066830476	3.02743214069836	1.03876278753641	-	-	-	paREP2b
183076	1.35995599492849	3.20162770447068	1.10159239813899	651	Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit	CP	NADH-ubiquinone oxidoreductase subunit
183077	1.47237425751982	3.69175975943101	1.1604614307166	-	-	-	NADH-ubiquinone oxidoreductase subunit
183078	1.42249003788229	3.49069675366833	1.12420727237956	-	-	-	NADH-ubiquinone oxidoreductase subunit
183079	1.41134213218012	2.89430250794212	0.99995621602334	1143	Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (chain I)	C	NADH-ubiquinone oxidoreductase subunit
183080	1.44938919306046	3.5567344446459	1.19871086215648	1005	NADH:ubiquinone oxidoreductase subunit 1 (chain H)	C	NADH-ubiquinone oxidoreductase subunit
183081	1.42021886785672	3.09020070782149	1.08804972842317	649	NADH:ubiquinone oxidoreductase 49 kD subunit 7	C	NADH-ubiquinone oxidoreductase subunit
183082	1.93608880199399	4.39012242362395	1.237446000167	-	-	-	paREP2a
183083	1.47513922054698	3.31904568564558	1.13567056038904	-	-	-	conserved within P. aerophilum
183084	1.39287548615834	3.14738807236654	0.988051504136188	-	-	-	paREP10, authentic frameshift
183085	1.44140280895274	3.13972466213367	1.03594299621402	302	GTP cyclohydrolase I	H	GTP cyclohydrolase I
183086	1.43368243220812	3.26760881324893	1.10845310680736	1028	Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)	IQR	3-oxoacyl-(acyl carrier protein) reductase
183087	1.50276204556277	3.40997251101809	1.147207088318	-	-	-	hypothetical protein
183088	1.41183768283241	3.10988158115636	1.02816329875337	1522	Transcriptional regulators	K	transcriptional regulatory protein, conjectural
183089	1.48656237939346	3.20904891452143	1.07856021561809	-	-	-	hypothetical protein
183090	1.46619265099917	3.05388979970149	1.07479316027469	308	Aminopeptidase N	E	aminopeptidase
183091	1.48756014068689	3.23704287283438	1.03893855366142	35	Uracil phosphoribosyltransferase	F	uracil phosphoribosyltransferase
183092	1.49506190012894	3.41852050122762	1.16782897541787	-	-	-	hypothetical protein
183093	1.4590860246455	3.19036247310107	1.04717146910918	-	-	-	paREP2b
183094	1.33483835201881	2.78167379306105	1.02338750561126	-	-	-	paREP2b
183095	1.44061542104959	3.3462479719432	1.11444243093748	-	-	-	paREP2b
183096	1.49029428234483	3.57374132253098	1.13277447543664	-	-	-	paREP2b
183097	1.41263419434696	2.88994330728281	1.11349396715119	-	-	-	paREP2b
183098	1.64097182279799	3.67231269541417	1.21051257882342	-	-	-	paREP2a
183099	1.56739567652667	3.31565059132039	1.02460910002162	-	-	-	paREP2a
183100	1.44767586063154	3.15934160416303	1.07096064019722	166	Glucose-6-phosphate isomerase	G	glucose-6-phosphate isomerase, conjectural
183101	1.51485901763949	3.32640193550356	1.14656141341163	1061	DNA or RNA helicases of superfamily II	KL	helicase, possible DNA repair rad25
183102	1.41085973808681	3.03155423010413	1.03038747144691	640	Predicted transcriptional regulators	K	P. aerophilum family 453, possible regulatory protein
183103	1.64571129041688	3.5561829652529	1.04683090554772	-	-	-	hypothetical protein
183104	1.47802366556728	3.03825781928344	0.955745880013841	-	-	-	hypothetical protein
183105	1.36807357209654	3.15433323053344	1.03252381163699	-	-	-	hypothetical protein
183106	1.45360921379043	3.06761797671638	1.07499431467504	60	Isoleucyl-tRNA synthetase	J	isoleucyl-tRNA synthetase
183107	1.5728165551612	3.26560522062501	1.05917486654124	-	-	-	paREP2a
183108	1.43018475486	3.01939002279183	1.02176713586659	-	-	-	paREP2b
183109	1.4074602955997	3.04185150801361	1.04184441407778	-	-	-	paREP2b
183110	1.4103052093981	3.28169815766053	1.14712412872229	4346	Predicted membrane-bound dolichyl-phosphate-mannose-protein mannosyltransferase	O	hypothetical protein
183111	1.48933600541818	3.3850107151758	1.08270968040658	1645	Uncharacterized Zn-finger containing protein	R	conserved hypothetical protein
183112	1.50421234473728	3.36755087092456	1.08322017052164	2112	Predicted Ser/Thr protein kinase	T	conserved hypothetical protein
183113	1.45904538298938	3.22173126155995	1.05237976279478	2016	Predicted RNA-binding protein (contains PUA domain)	J	conserved protein with predicted RNA binding PUA domain
183114	1.41017372240054	3.13723169132198	1.0713799495484	1395	Predicted transcriptional regulator	K	hypothetical protein
183115	1.50324285498494	3.22713035145685	1.116862341455	1867	N2,N2-dimethylguanosine tRNA methyltransferase	J	N2,N2-dimethylguonasine tRNA methyltransferase
183116	1.52223100302659	3.45667375307195	1.11573888562209	237	Dephospho-CoA kinase	H	adenylate kinase, conjectural
183117	1.43368938791858	3.18996515994052	1.10589266392758	-	-	-	paREP2b
183118	1.55263829576747	3.31522662188918	1.08228151963443	1931	Uncharacterized protein conserved in archaea	S	conserved hypothetical protein
183119	1.51198275682926	3.33090869863953	1.09844843297222	1041	Predicted DNA modification methylase	L	hypothetical protein
183120	1.49502215264807	3.36681537470143	1.13063847369507	2237	Predicted membrane protein	S	conserved hypothetical protein
183121	1.41624563913358	3.05640850009131	0.994737932443941	1340	Uncharacterized archaeal coiled-coil protein	S	conserved hypothetical protein
183122	1.55690195695393	3.53023762385398	1.14039433665269	1709	Predicted transcriptional regulator	K	conserved hypothetical protein
183123	1.45827874135277	3.27836659127238	1.10080431813683	4352	Ribosomal protein L13E	J	ribosomal protein L13
183124	1.41444177537153	3.60927265114505	1.10252890661986	-	-	-	hypothetical protein
183125	1.59897228308786	3.43287259244605	0.918611378805734	-	-	-	hypothetical protein
183126	1.52949409249719	3.18164603660449	1.05693635399938	537	Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases	FGR	hypothetical protein
183127	1.48381502998654	3.28379975834218	1.10433709989314	1405	Transcription initiation factor TFIIIB, Brf1 subunit/Transcription initiation factor TFIIB	K	transcription initiation factor IIB (TFIIB)
183128	1.44257356842063	3.1187172278079	1.07094170261379	470	ATPase involved in DNA replication	L	replication factor C small subunit
183129	1.52908077052517	3.46123641512528	1.13732766017006	-	-	-	hypothetical protein
183130	1.4727147814973	3.25430246064687	1.09360740530176	1163	Predicted GTPase	R	GTP-binding protein
183131	1.58208533422398	3.49782886908057	1.06646323029472	1024	Enoyl-CoA hydratase/carnithine racemase	I	enoyl-CoA hydratase, probable
183132	1.50217450388993	3.08642528131515	1.07206901923236	538	Isocitrate dehydrogenases	C	isocitrate dehydrogenase
183133	1.40436842790049	3.03635558261751	1.0346257503668	454	Histone acetyltransferase HPA2 and related acetyltransferases	KR	N-acyltransferase
183134	1.51329449902109	3.22663503588258	1.02622129514955	1499	NMD protein affecting ribosome stability and mRNA decay	J	conserved hypothetical protein
183135	1.4391417389846	3.08695623486681	1.07256987937464	-	-	-	paREP2b
183136	1.44537983210436	3.12555142640951	1.02718995380008	-	-	-	paREP2b
183137	1.39273547600084	2.84553303658843	0.914698897153621	-	-	-	paREP2a
183138	1.4575897463285	3.0753890156587	1.04652589481903	270	Site-specific DNA methylase	L	C-5 cytosine-specific DNA methylase
183139	1.4506966719537	3.15820604094651	1.02547879512943	-	-	-	hypothetical protein
183140	1.4788752485805	3.05730678593598	1.01796298087726	-	-	-	hypothetical protein
183141	1.55865472469654	3.25955756556146	1.11547073665314	-	-	-	paREP2b
183142	1.384430015988	2.96067294126683	1.0565433476838	-	-	-	paREP2a
183143	1.51933742187872	3.27895799665864	1.09306147842465	-	-	-	paREP2a
183144	1.45064657921049	3.13438987909484	1.09930195594819	72	Phenylalanyl-tRNA synthetase beta subunit	J	phenylalanyl-tRNA synthetase beta subunit
183145	1.37731230491495	3.08194609310185	1.07275533903976	-	-	-	hypothetical protein
183146	1.47917839265485	3.10915141263285	1.05825352769833	-	-	-	paREP2b
183147	1.54572815198026	3.04894736303239	1.14440386938101	-	-	-	paREP2a
183148	1.44616256969518	2.99445689370707	0.975644547924976	-	-	-	paREP2a
183149	1.62019190499377	3.56853304874461	1.09004555980241	-	-	-	hypothetical protein
183150	1.44674054809471	3.06768650497968	1.03654883498212	-	-	-	hypothetical protein
183151	1.42297969370058	3.08934957877726	1.01530158311748	2606	Uncharacterized conserved protein	S	conserved hypothetical protein
183152	1.3918510149565	2.90165596141217	1.02486252142851	1371	Uncharacterized conserved protein	S	conserved hypothetical protein
183153	1.46891754489356	3.24668123659028	1.08628405451846	269	3-hexulose-6-phosphate synthase and related proteins	G	D-arabino 3-hexulose 6-phosphate formaldehyde lyase, conjectural
183154	1.4723034227913	3.05631810573771	1.00996322046286	2019	Archaeal adenylate kinase	F	adenylate kinase
183155	1.37991765329682	3.01430563460619	1.04430154804761	693	Putative intracellular protease/amidase	R	hypothetical protein
183156	1.48960716677248	3.38509100266283	1.16527228315327	371	Glycerol dehydrogenase and related enzymes	C	glycerol dehydrogenase (gldA)
183157	1.40280913345502	2.96077508199398	0.979006084221747	-	-	-	hypothetical protein
183158	1.44033703157272	3.06180379706509	1.05136784647666	281	Malic enzyme	C	malate oxidoreductase (mae)
183159	1.41154387555631	3.00013409571861	1.03726114567757	372	Citrate synthase	C	citrate synthase
183160	1.41959131085651	3.18638999992523	1.07678730176315	-	-	-	conserved hypothetical protein
183161	1.43566598564352	3.03978070666045	1.06406866561879	1224	DNA helicase TIP49, TBP-interacting protein	K	TBP-interacting protein TIP49
183162	1.46501028552943	3.40167385926796	1.08873090810406	-	-	-	hypothetical protein
183163	1.52994539428404	3.3056085435265	1.07315798563187	-	-	-	paREP2b
183164	1.4251160319539	3.13063311076041	1.03301644276245	-	-	-	paREP2b
183165	1.51567126468429	3.19632406164206	1.00757079787342	-	-	-	paREP2a
183166	1.45637629826549	3.31414236601641	1.14516068585793	750	Predicted membrane-associated Zn-dependent proteases 1	M	conserved hypothetical protein
183167	1.47423475575242	3.19264440803515	1.05747949776791	-	-	-	hypothetical protein
183168	1.25007273032696	2.75790826664125	1.09166966481582	-	-	-	hypothetical protein containing C2H2 zinc finger motifs, degenerate
183169	1.52010176486564	3.2185957555044	1.10197338668418	-	-	-	paREP2b
183170	1.39748510823322	2.85315624959723	1.1505392447336	-	-	-	paREP2a
183171	1.30909081979547	2.60365131642687	1.02167408105423	-	-	-	paREP2a
183172	1.61589126372237	3.5780150965352	1.10022757080219	-	-	-	paREP2a
183173	1.50278944797638	3.46518878807503	1.09430578629229	4920	Predicted membrane protein	S	conserved hypothetical protein
183174	1.39113615295078	2.97139588390837	1.0262325336532	2058	Ribosomal protein L12E/L44/L45/RPP1/RPP2	J	ribosomal protein L12
183175	1.38810713034233	3.07422864818236	1.05280569953648	-	-	-	ribosomal protein L38
183176	1.22917051535962	2.83389156321972	0.880465406365851	2096	Uncharacterized conserved protein	S	conserved hypothetical protein
183177	1.52132278673621	3.26875427826975	1.10642353422694	2513	PEP phosphonomutase and related enzymes	G	carboxyphosphonoenolpyruvate phosphonomutase (prpB)
183178	1.34981376797601	2.90272742220946	1.02046214801003	2079	Uncharacterized protein involved in propionate catabolism	R	propionate catabolism protein prpD
183179	1.41135849177659	2.80551952026471	1.11542380945885	-	-	-	hypothetical protein
183180	1.48135513230226	3.27986324895601	1.13537055334833	-	-	-	P. aerophilum family 66 protein
183181	1.43146284030509	3.77092694283623	1.21655062068261	-	-	-	P. aerophilum family 550 protein
183182	1.62519206900166	3.63021719088381	1.16198302130432	-	-	-	hypothetical protein
183183	1.48670473367604	3.29412815591755	1.11099444829919	-	-	-	hypothetical protein
183184	1.52832916763593	3.40395455641805	1.05453887710145	-	-	-	conserved within P. aerophilum, authentic frameshift
183185	1.34728991212335	2.87433047433819	1.02188918758814	492	Thioredoxin reductase	O	thioredoxin reductase (trxB)
183186	1.44074667977431	3.18513235662983	1.10203698590715	-	-	-	conserved within P. aerophilum
183187	1.4976070916495	3.25543064594672	1.07332714921932	-	-	-	protease, conjectural
183188	1.39663195475698	3.07977515997259	1.08019738907225	185	Ribosomal protein S19	J	ribosomal protein S19
183189	1.38289538014965	2.90955168908772	1.01714317739012	186	Ribosomal protein S17	J	ribosomal protein S17
183190	1.3966733123325	2.87820860512223	1.05066747588125	-	-	-	paREP2a
183191	1.39748510823322	2.85315624959723	1.1505392447336	-	-	-	paREP2a
183192	1.46993811583979	3.11207739681844	1.06314283393004	-	-	-	paREP2b
183193	1.44160687010134	3.2518951264026	1.05418669293569	1948	ERCC4-type nuclease	L	conserved hypothetical protein
183194	1.44129972852523	3.12195674521769	1.06374007247204	2723	Beta-glucosidase/6-phospho-beta-glucosidase/beta-galactosidase	G	beta-glucosidase
183195	1.40414788249185	3.14260221721142	1.05533448457207	589	Universal stress protein UspA and related nucleotide-binding proteins	T	conserved hypothetical protein
183196	1.41374372335971	2.95965145860839	1.00959001830289	57	Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase	G	glyceraldehyde-3-phosphate dehydrogenase
183197	1.42503123873241	3.1170980560143	1.0671040867932	126	3-phosphoglycerate kinase	G	phosphoglycerate kinase
183198	1.36154861035976	2.84045443360818	1.00428682137399	4914	Predicted nucleotidyltransferase	R	conserved hypothetical protein
183199	1.41911132913285	2.98760213538568	1.06085962198809	441	Threonyl-tRNA synthetase	J	threonyl-tRNA synthetase
183200	1.49998352661879	3.16437907732347	0.993991679472354	1586	S-adenosylmethionine decarboxylase	E	conserved hypothetical protein
183201	1.52507223727453	3.33426191740558	1.11593006938519	-	-	-	hypothetical protein
183202	1.55942932154491	3.87459897405227	1.19402702590945	-	-	-	P. aerophilum family 550 protein
183203	1.49421472847049	3.33275033135148	1.14606498114746	-	-	-	P. aerophilum family 66 protein
183204	1.42824738668088	2.88568774174009	0.947288355783831	1763	Molybdopterin-guanine dinucleotide biosynthesis protein	H	molybdopterin-guanine dinucleotide biosynthesis protein B, conjectural
183205	1.35645128885605	3.04985448169056	1.04222648982094	1695	Predicted transcriptional regulators	K	conserved hypothetical protein
183206	1.37732913842179	2.96953236488061	1.04480322884483	1260	Myo-inositol-1-phosphate synthase	I	myo-inositol-1-phosphate synthase, conjectural
183207	1.40995466464898	3.05896858634009	1.07025150251726	247	Fe-S oxidoreductase	C	iron-sulfur binding reductase, probable
183208	1.41823789353051	3.0290338900926	1.04121136708216	1468	RecB family exonuclease	L	conserved hypothetical protein
183209	1.43534474368309	3.22983130943725	1.12997222631985	5258	GTPase	R	GTP-binding protein
183210	1.46453146320038	3.67028947369129	1.22072207824852	-	-	-	hypothetical protein
183211	1.48054899846381	3.27569156105639	1.12634317080114	-	-	-	paREP2a
183212	1.62130572800459	3.57854772279619	1.08591364170449	-	-	-	paREP2a
183213	1.36936726780559	2.78886229524031	0.971479406281092	-	-	-	paREP2a
183214	1.47435648619284	3.21767780555216	1.10347732630209	-	-	-	paREP2b
183215	1.50097610572634	3.52781935128238	1.21804932282197	3808	Inorganic pyrophosphatase	C	vacuolar-type H+-pyrophosphatase
183216	1.50844616467251	3.24313384576457	1.10516628332759	-	-	-	paREP2a
183217	1.38242599634113	3.1102703448953	1.10284390859312	1269	Archaeal/vacuolar-type H+-ATPase subunit I	C	H+-transporting ATP synthase subunit I (atpI), conjectural
183218	1.41017512163963	3.23315986314466	1.09415745111791	685	5,10-methylenetetrahydrofolate reductase	E	conserved hypothetical protein
183219	1.40688863125128	3.15444354302458	1.07935317644482	1192	ATPases involved in chromosome partitioning	D	conserved hypothetical protein
183220	1.45241278355844	3.28498836003753	1.09433511307261	-	-	-	hypothetical protein
183221	1.40770552893162	3.01609511827666	1.03499847473103	-	-	-	conserved protein
183222	1.51444314085985	3.36665999407788	1.08154997795868	255	Ribosomal protein L29	J	ribosomal protein L29
183223	1.38739882197852	2.95327386480542	1.03927057027795	92	Ribosomal protein S3	J	ribosomal protein S3
183224	1.60867794146407	3.47921169780524	1.15020667717663	-	-	-	conserved protein part 2, authentic frameshift
183225	1.3958062028394	3.06968121629004	1.0449615016894	-	-	-	conserved protein part 1, authentic frameshift
183226	1.33955575074762	2.83844630647779	1.00542999452984	91	Ribosomal protein L22	J	ribosomal protein L22
183227	1.51847579876981	3.30303500804357	1.13915297664537	-	-	-	hypothetical protein
183228	1.41101571153054	3.40651764411203	1.1534595997592	382	4-hydroxybenzoate polyprenyltransferase and related prenyltransferases	H	conserved hypothetical protein
183229	1.43592813301692	3.13160831549229	1.08068308319198	1011	Predicted hydrolase (HAD superfamily)	R	conserved hypothetical protein
183230	1.46869830380439	3.15425330077705	1.05079440802771	-	-	-	hypothetical protein
183231	1.55431866224785	3.6051773137108	1.17440635024867	-	-	-	conserved within P. aerophilum
183232	1.4230328040078	3.17925081617219	1.11238167593357	1672	Predicted ATPase (AAA+ superfamily)	R	conserved hypothetical protein
183233	1.40937329420291	3.13928226455328	1.10947649335465	-	-	-	hypothetical protein
183234	1.29571725823025	2.80695295795655	0.920001436218036	328	Ribonuclease HI	L	hypothetical protein
183235	1.34750345564131	2.91282873513246	1.0014635282642	4978	Transcriptional regulator, effector-binding domain/component	KT	hypothetical protein
183236	1.57250611662831	3.40696169411486	1.10227809613779	1637	Predicted nuclease of the RecB family	L	conserved hypothetical protein
183237	1.36813448243609	2.79886287359302	1.02161467688167	-	-	-	conserved within P. aerophilum
183238	1.35343615055431	2.90880638155937	1.0250221657052	160	4-aminobutyrate aminotransferase and related aminotransferases	E	4-aminobutyrate aminotransferase
183239	1.42241288825195	3.17743326437487	1.1218406422059	-	-	-	P. aerophilum family 59 protein
183240	1.43000127029687	3.5668849390178	1.19480367847727	-	-	-	hypothetical protein
183241	1.64782626372878	3.56559726461367	1.0726948334069	-	-	-	hypothetical protein
183242	1.38806059571231	2.98233872859584	1.00121461167458	-	-	-	hypothetical protein
183243	1.46246716357159	3.08887682126002	1.07187481251233	-	-	-	hypothetical protein
183244	1.4728211443539	3.66288899145656	1.15319445768334	-	-	-	conserved within P. aerophilum
183245	1.37490877841114	3.03513975196683	1.05490314823098	396	ABC-type transport system involved in Fe-S cluster assembly, ATPase component	O	ABC transporter, putative
183246	1.21308496641271	2.8341793301469	1.16267720859022	-	-	-	paREP2a
183247	1.31540105579248	2.67429533439469	1.09565906003639	-	-	-	paREP2a
183248	1.36297788002491	3.06238156711929	1.11481735212449	-	-	-	paREP2b
183249	1.32375765551604	2.84333073083274	1.00429935021378	719	ABC-type transport system involved in Fe-S cluster assembly, permease component	O	ABC transporter subunit, putative
183250	1.65091622788044	3.42117108070865	1.07682834291961	-	-	-	hypothetical protein
183251	1.31958491548023	2.84883999179932	0.991011005391445	-	-	-	hypothetical protein
183252	1.47734974349737	3.19271464378617	1.07770500872832	-	-	-	hypothetical protein
183253	1.33904583106838	2.78254724629838	0.99521108064789	189	Glutathione synthase/Ribosomal protein S6 modification enzyme (glutaminyl transferase)	HJ	ribosomal protein S6 modification protein (rimK)
183254	1.51258331198152	3.32011390743663	1.1141326617389	-	-	-	hypothetical protein
183255	1.50749754858998	3.4676385632702	1.14933024642691	-	-	-	hypothetical protein
183256	1.2339272890832	2.73508108412113	1.02632357418585	-	-	-	conserved within P. aerophilum part 2, authentic frameshift
183257	1.43774507020106	3.21924501534126	1.07457588935347	-	-	-	conserved within P. aerophilum part 1, authentic frameshift
183258	1.5040440732943	3.17695427327933	1.03475445953716	-	-	-	hypothetical protein
183259	1.55047489868921	3.34646265913975	1.04056158797333	-	-	-	hypothetical protein
183260	1.53628010580275	3.34725441529714	1.12264689591758	675	Transposase and inactivated derivatives	L	paREP12
183261	1.74153100510278	3.98830216665736	1.17176874823634	-	-	-	paREP13
183262	1.3113426493697	2.90945358010315	1.05393430951535	-	-	-	hypothetical protein
183263	1.39266596890235	3.16667322433136	1.1007181188858	-	-	-	hypothetical protein
183264	1.36943845139425	2.89052655089317	0.997372649705166	1325	Predicted exosome subunit	J	conserved protein
183265	1.31961896631534	2.82992671526323	0.987331209311552	1632	Ribosomal protein L15E	J	ribosomal protein L15
183266	1.37435244004223	3.01170414535212	1.07646633520553	-	-	-	hypothetical protein
183267	1.3218658029727	2.85972749544672	0.912097756178136	1351	Predicted alternative thymidylate synthase	F	conserved hypothetical protein
183268	1.3315345567328	3.12993920108984	1.07960206311092	1215	Glycosyltransferases, probably involved in cell wall biogenesis	M	glycosyl transferase, putative
183269	1.34521004365644	2.86777858259059	0.994497310650724	1190	Lysyl-tRNA synthetase (class II)	J	lysyl-tRNA synthetase
183270	1.43272301100997	3.22834674498513	1.09423957155533	446	Uncharacterized NAD(FAD)-dependent dehydrogenases	R	conserved hypothetical protein
183271	1.43249939529004	3.24476858047401	1.08445486329289	-	-	-	hypothetical protein
183272	1.33662251811841	2.94171055443701	0.943903855755897	43	3-polyprenyl-4-hydroxybenzoate decarboxylase and related decarboxylases	H	conserved hypothetical protein
183273	1.35047934038904	3.06867419792616	1.03572225771646	1814	Uncharacterized membrane protein	S	conserved hypothetical protein
183274	1.39967880022854	3.17592472827834	1.00535826194008	640	Predicted transcriptional regulators	K	P. aerophilum family 453, possible regulatory protein
183275	1.56039155995067	3.28047833193683	1.0679301464067	-	-	-	rRNA intron-encoded homing endonuclease, possible
183276	1.44315037253393	3.2330124546289	1.10588762970978	-	-	-	hypothetical protein
183277	1.47051148779342	3.23076969970329	1.07608685369762	-	-	-	conserved within P. aerophilum
183278	1.55293936458371	3.29579296451587	1.10395823492501	-	-	-	conserved within P. aerophilum
183279	1.47755922045983	3.22764872215059	1.0835072231754	666	FOG: Ankyrin repeat	R	hypothetical protein with 4 ankyrin repeats
183280	1.48360469861445	3.26852577629303	1.11610545039676	-	-	-	conserved within P. aerophilum
183281	1.69025759486423	3.81833766446721	1.11692281353818	-	-	-	hypothetical protein
183282	1.68879922772161	3.67624033876749	1.10461540583711	-	-	-	paREP7
183283	1.45789472764734	3.01724708497892	1.02191525766279	-	-	-	paREP7
183284	1.35654838677984	3.13888434628143	1.08556855149504	-	-	-	paREP7
183285	1.48552219177003	3.22794943961508	0.950310076392825	2445	Uncharacterized conserved protein	S	paREP11
183286	1.48883217025486	3.16312998807849	1.06097441321871	-	-	-	conserved within P. aerophilum
183287	1.47434733832372	3.08063450658308	1.04666142128366	2513	PEP phosphonomutase and related enzymes	G	isocitrate lyase
183288	1.51514962176896	3.20244433629387	1.05552929627762	517	FOG: CBS domain	R	conserved protein with 2 CBS domains
183289	1.49512014887441	3.11517618246244	0.9935961052762	-	-	-	paREP7
183290	1.36578622294828	3.0521048718392	1.05848637467392	-	-	-	conserved within P. aerophilum
183291	1.35258012295732	3.24995308289357	1.0959050868616	1132	ABC-type multidrug transport system, ATPase and permease components	V	ATP binding protein, degenerate
183292	1.58228299280275	3.63199141620558	1.09367468249792	-	-	-	hypothetical protein
183293	1.33917030911571	2.83767195062931	0.981134164021297	5493	Uncharacterized conserved protein containing a coiled-coil domain	S	conserved hypothetical protein
183294	1.44143217362915	3.6351799721322	1.23245546905504	306	Phosphate/sulphate permeases	P	phosphate permease, conjectural
183295	1.42677139813722	3.09906636837159	1.06929163805671	2132	Putative multicopper oxidases	Q	multicopper oxidase
183296	1.48293337359512	3.18129600310142	1.01684995827759	-	-	-	paREP6
183297	1.42880834197831	3.18905731788375	1.07934017827078	-	-	-	conserved hypothetical protein
183298	1.42446956723131	3.06377901546159	1.06452299630205	-	-	-	paREP6
183299	1.43173307361035	3.15183700805793	1.05649647011571	1708	Predicted nucleotidyltransferases	R	conserved hypothetical protein
183300	1.47280731422453	3.22509619659646	1.05113929580333	2250	Uncharacterized conserved protein related to C-terminal domain of eukaryotic chaperone, SACSIN	S	conserved hypothetical protein
183301	1.41123753039552	3.42558142807345	1.18649990108841	-	-	-	hypothetical protein
183302	1.52348603655645	3.77236860707187	1.20383131097797	-	-	-	hypothetical protein
183303	1.30222554740421	3.32030822724065	1.15403638520329	-	-	-	hypothetical protein
183304	1.42960771150278	3.13618066167346	1.08412007546934	-	-	-	paREP2b
183305	1.4449286894445	3.23737422277018	1.05674043532542	-	-	-	paREP8
183306	1.48704494157345	3.16894590070568	1.0695524905103	2250	Uncharacterized conserved protein related to C-terminal domain of eukaryotic chaperone, SACSIN	S	conserved hypothetical protein
183307	1.3123316996584	3.02520829718955	1.01157663796882	1708	Predicted nucleotidyltransferases	R	conserved hypothetical protein
183308	1.39390768730685	3.26707514088421	1.10038785392049	1266	Predicted metal-dependent membrane protease	R	P. aerophilum family 322 protein part 2, authentic frameshift
183309	1.4550604244522	3.5832022718142	1.17492256292418	-	-	-	P. aerophilum family 322 protein part 1, authentic frameshift
183310	1.5274720297119	3.55280223508261	1.14773269810029	-	-	-	conserved within P. aerophilum
183311	1.4418762126434	3.51094485036229	1.16878583094148	-	-	-	hypothetical protein
183312	1.4402116436823	3.55728869292647	1.15620857105369	-	-	-	hypothetical protein
183313	1.32586831415413	2.86844709061916	0.978079192076239	82	Chorismate synthase	E	chorismate synthase (aroC)
183314	1.38437462281132	2.94064089879305	1.03132189030682	169	Shikimate 5-dehydrogenase	E	shikimate 5-dehydrogenase (aroE)
183315	1.58600670436484	3.52325940574588	1.12709873928492	-	-	-	hypothetical protein
183316	1.3441608906591	2.96394450538272	1.06410066033338	-	-	-	hypothetical protein
183317	1.33044078345125	3.15984363066407	1.09716583871076	345	Pyrroline-5-carboxylate reductase	E	pyrroline-5-carboxylate reductase
183318	1.44748483286931	3.14388401212747	1.07535712643656	1051	ADP-ribose pyrophosphatase	F	mutT/nudix family protein
183319	1.3891542564744	2.96546232032947	1.0363385504959	1702	Phosphate starvation-inducible protein PhoH, predicted ATPase	T	phoH like protein
183320	1.45289507923503	3.15877146085784	1.073107638675	1064	Zn-dependent alcohol dehydrogenases	R	alcohol dehydrogenase (Zinc)
183321	1.4614976236942	3.1678382489705	1.08595908707692	451	Nucleoside-diphosphate-sugar epimerases	MG	UDP-glucose 4-epimerase (galE-1)
183322	1.45421212623788	3.24491079339255	1.12263070392008	128	5-enolpyruvylshikimate-3-phosphate synthase	E	3-phosphoshikimate 1-carboxyvinyltransferase (aroA)
183323	1.43318055530904	3.24624135747778	1.12113139221537	337	3-dehydroquinate synthetase	E	3-dehydroquinate synthase
183324	1.34950359546596	2.99843914280029	1.07555406597674	3958	Transketolase, C-terminal subunit	G	transketolase (C terminal section)
183325	1.42430010361763	3.0798476156307	1.07088984782212	3959	Transketolase, N-terminal subunit	G	transketolase (N terminal section)
183326	1.34398619302575	2.90521408716619	1.01206035621804	162	Tyrosyl-tRNA synthetase	J	tyrosyl-tRNA synthetase
183327	1.44734132466634	3.19230763706671	1.09725530554433	2876	3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase	E	phospho-2-dehydro-3-deoxyheptonate aldolase
183328	1.41748379881615	3.28019070621804	1.13352379358769	2068	Uncharacterized MobA-related protein	R	conserved protein
183329	1.42199191928237	3.08491482844349	1.09557737992501	1529	Aerobic-type carbon monoxide dehydrogenase, large subunit CoxL/CutL homologs	C	carbon monoxide dehydrogenase large subunit, conjectural
183330	1.45280039922622	3.1116433151999	1.06408979933414	2080	Aerobic-type carbon monoxide dehydrogenase, small subunit CoxS/CutS homologs	C	carbon monoxide dehydrogenase small subunit, conjectural
183331	1.46281986982662	3.30355267692175	1.11906457556663	1319	Aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM/CutM homologs	C	carbon monoxide dehydrogenase medium subunit, conjectural
183332	1.31615317776456	2.92473763753946	1.02304581221325	287	Prephenate dehydrogenase	E	chorismate mutase, conjectural
183333	1.36888050529206	2.95017896900492	1.0056356222852	-	-	-	paREP5
183334	1.47358739002341	3.23065254200214	1.0736542434067	-	-	-	hypothetical protein
183335	1.40399375747484	3.14457063408404	1.10709709720427	-	-	-	hypothetical protein
183336	1.34209196655235	3.07092536768113	1.04544222869186	640	Predicted transcriptional regulators	K	P. aerophilum family 453, possible regulatory protein
183337	1.46675518095235	3.42925870000073	1.12299064225676	2445	Uncharacterized conserved protein	S	paREP11
183338	1.37883753785026	3.04912148089916	1.02137954342388	1708	Predicted nucleotidyltransferases	R	conserved hypothetical protein
183339	1.29344822053367	3.09208791148759	1.04802519417164	-	-	-	hypothetical protein
183340	1.38714982044652	3.30427733520673	1.08361070018505	-	-	-	hypothetical protein
183341	1.4122748112634	3.20984947824313	1.12540232641728	-	-	-	hypothetical protein
183342	1.3776397069627	3.01146901965287	1.07741649556549	-	-	-	hypothetical protein
183343	1.35569681405857	3.09228591995549	1.02663672042876	1100	GTPase SAR1 and related small G proteins	R	conserved within P. aerophilum
183344	1.3478027602242	2.99814102544016	1.02927743805644	1605	Chorismate mutase	E	3-dehydroquinate dehydratase (aroD) / possible chorismate mutase (multidomain protein)
183345	1.38747445061978	2.977815258555	1.03168332643146	-	-	-	hypothetical protein
183346	1.38555489395483	2.99563144347162	1.03077500443801	436	Aspartate/tyrosine/aromatic aminotransferase	E	aspartate aminotransferase (aspC), conjectural
183347	1.26909103716265	2.48323907714341	1.14331512319138	-	-	-	hypothetical protein
183348	1.4176075897615	3.17708257587093	1.0871698656111	1685	Archaeal shikimate kinase	EH	conserved hypothetical protein
183349	1.39133249605651	3.00725670933396	1.05975697213463	1501	Alpha-glucosidases, family 31 of glycosyl hydrolases	G	alpha-glucosidase
183350	1.32146338113334	2.83561825204183	0.966684718738974	4847	Uncharacterized protein conserved in archaea	S	conserved hypothetical protein
183351	1.46178847230009	3.23590369398717	1.10074241814974	87	Ribosomal protein L3	J	ribosomal protein L3
183352	1.39235623013988	3.05926259672392	1.04251742824679	88	Ribosomal protein L4	J	ribosomal protein L4
183353	1.40705855033156	3.05909450807601	1.06078151575902	89	Ribosomal protein L23	J	ribosomal protein L23
183354	1.35513084350586	2.94642955683594	1.01298416387035	-	-	-	hypothetical protein
183355	1.44237406426734	3.07969013553222	1.05198542746296	1096	Predicted RNA-binding protein (consists of S1 domain and a Zn-ribbon domain)	J	conserved protein (RNA polymerase related?)
183356	1.57242732075898	3.59462375566929	1.14837983319251	3286	Uncharacterized protein conserved in archaea	S	conserved hypothetical protein
183357	1.62891963564384	3.60803166046659	1.08943022480875	1761	DNA-directed RNA polymerase, subunit L	K	DNA-directed RNA polymerase subunit L (rpoL)
183358	1.45989036156541	3.27150489239304	1.05987068719495	1756	Uncharacterized conserved protein	S	conserved hypothetical protein
183359	1.52025012333018	3.31151480165127	1.1189637393595	-	-	-	hypothetical protein
183360	1.48928080878421	3.13249647657244	1.01442964990784	1404	Subtilisin-like serine proteases	O	aerolysin, part 1, authentic frameshift
183361	1.47342423049371	3.3405800531091	1.11243817342556	1404	Subtilisin-like serine proteases	O	aerolysin, part 2, authentic frameshift
183362	1.43243105069599	3.04402471196426	1.05822034220124	65	3-isopropylmalate dehydratase large subunit	E	3-isopropylmalate dehydratase large subunit (leuC)
183363	1.39679711660841	3.06279892293971	1.08475779301494	78	Ornithine carbamoyltransferase	E	ornithine carbamoyltransferase (argF)
183364	1.41809598295883	3.02020369029335	1.03337970549955	119	Isopropylmalate/homocitrate/citramalate synthases	E	2-isopropylmalate synthase (leuA) with possible unusual start codon
183365	1.45847257637299	3.15324727489028	1.08502926890468	5270	PUA domain (predicted RNA-binding domain)	J	conserved hypothetical protein
183366	1.44631815011737	3.19545331445509	1.06357714553177	1913	Predicted Zn-dependent proteases	R	conserved hypothetical protein
183367	1.48317200965819	3.26478470937	1.08782690025559	66	3-isopropylmalate dehydratase small subunit	E	3-isopropylmalate dehydratase small subunit (leuD)
183368	1.40801318977889	3.02747007373029	1.07695231582131	119	Isopropylmalate/homocitrate/citramalate synthases	E	2-isopropylmalate synthase (leuA) with possible unusual start codon
183369	1.47520671008063	3.08880745551413	1.07795130508495	473	Isocitrate/isopropylmalate dehydrogenase	CE	3-isopropylmalate dehydrogenase (leuB)
183370	1.41946273149185	3.04384312398501	1.06495236938812	334	Glutamate dehydrogenase/leucine dehydrogenase	E	glutamate dehydrogenase
183371	1.41935463248378	3.0991952653633	1.00197507661049	-	-	-	hypothetical protein
183372	1.39774552179649	2.98380623045896	1.03932783093518	4900	Predicted metallopeptidase	R	conserved hypothetical protein
183373	1.40538859634048	3.23428635728619	1.09952639757849	765	ABC-type amino acid transport system, permease component	E	glutamine transport system permease protein, putative
183374	1.44483641653127	3.2750884274426	1.14198040035955	1126	ABC-type polar amino acid transport system, ATPase component	E	glutamine transport ATP-binding
183375	1.38900161477759	2.96857111205146	1.04950222486372	243	Anaerobic dehydrogenases, typically selenocysteine-containing	C	molybdopterin oxidoreductase
183376	1.40601968665882	2.95816131277701	1.02053558923154	84	Mg-dependent DNase	L	conserved hypothetical protein
183377	1.37524018980065	2.97499126785515	1.03652551498618	639	Diadenosine tetraphosphatase and related serine/threonine protein phosphatases	T	serine/threonine specific protein phosphatase
183378	1.45862952266178	3.30318058148541	1.15687551108765	-	-	-	P. aerophilum family 59 protein
183379	1.51470413059198	3.66574644125878	1.15438020396694	-	-	-	P. aerophilum family 3 protein
183380	1.3839187035444	3.01048282952275	1.00007345293849	717	Deoxycytidine deaminase	F	deoxycytidine triphosphate deaminase
183381	1.33897708232763	3.04786460331518	1.07551868519704	-	-	-	hypothetical protein
183382	1.55986636692714	3.59306184460397	1.14521865009662	1977	Molybdopterin converting factor, small subunit	H	conserved hypothetical protein
183383	1.34721162872186	3.05405001513412	1.05144599584755	350	Methylated DNA-protein cysteine methyltransferase	L	methylated-DNA--[protein]-cysteine S-methyltransferase (ogt)
183384	1.35622236876376	2.72379655138487	0.997321152938334	1141	Ferredoxin	C	ferredoxin
183385	1.40411752775568	3.42937359538554	1.11158501901505	-	-	-	conserved within P. aerophilum
183386	1.36837860739987	3.03485530545781	1.04181016617834	560	Phosphoserine phosphatase	E	phosphoserine phosphatase (serB)
183387	1.38611674038572	2.96500766691795	1.03481998372154	704	Phosphate uptake regulator	P	conserved hypothetical protein
183388	1.44357766656104	3.47326133426763	1.15744815848526	4089	Predicted membrane protein	S	conserved hypothetical protein
183389	1.46306422845857	3.16661365780506	1.04857678372539	1731	Archaeal riboflavin synthase	H	conserved hypothetical protein
183390	1.40628197876087	3.02405569916352	1.07177204847865	864	Predicted transcriptional regulators containing the CopG/Arc/MetJ DNA-binding domain and a metal-bin	K	conserved (helix-turn-helix protein, copG family)
183391	1.37099221061166	2.92069115116791	0.97315485705369	1310	Predicted metal-dependent protease of the PAD1/JAB1 superfamily	R	conserved hypothetical protein
183392	1.43564576089363	3.05744174291869	1.08863174139947	6	Xaa-Pro aminopeptidase	E	xaa-Pro dipeptidase, putative
183393	1.72154514254639	3.89947254934429	1.07414774094873	-	-	-	paREP10, authentic frameshift
183394	1.40622510561337	2.99816059933075	1.0544583329328	146	N-methylhydantoinase B/acetone carboxylase, alpha subunit	EQ	N-methylhydantoinase B (hyuB)
183395	1.41397380097657	3.11854119577195	1.1080036351156	145	N-methylhydantoinase A/acetone carboxylase, beta subunit	EQ	N-methylhydantoinase A (hyuA)
183396	1.54161670577093	3.3469990286301	1.03586181466032	4274	Uncharacterized conserved protein	S	conserved hypothetical protein
183397	1.46433269437705	3.34603921080239	1.0930763718276	2445	Uncharacterized conserved protein	S	paREP11
183398	1.54576808486427	3.7058434180669	1.12713662644758	1708	Predicted nucleotidyltransferases	R	hypothetical protein
183399	1.3927461562754	3.09462751573233	1.08541278687948	277	FAD/FMN-containing dehydrogenases	C	D-lactate dehydrogenase
183400	1.49778607629044	3.93289924879341	1.2853988435347	-	-	-	hypothetical protein
183401	1.41711474328339	3.1982790315499	1.09762207595282	1721	Uncharacterized conserved protein (some members contain a von Willebrand factor type A (vWA) domain)	R	hypothetical protein
183402	1.35726943535583	2.97545116134888	1.05189002445308	714	MoxR-like ATPases	R	moxR related protein
183403	1.43656268928776	3.39502344070412	1.1588006088945	-	-	-	hypothetical protein
183404	1.42040190831031	3.23649922475489	1.10684953785282	1305	Transglutaminase-like enzymes, putative cysteine proteases	E	hypothetical protein
183405	1.25833708471445	2.82933801558614	0.961666704734863	640	Predicted transcriptional regulators	K	P. aerophilum family 453, possible regulatory protein
183406	1.27170869696458	2.84434285692454	0.977238361257925	467	RecA-superfamily ATPases implicated in signal transduction	T	P. aerophilum family 417, putative ATP binding
183407	1.37973128200992	3.03871341331404	1.00299334030563	-	-	-	P. aerophilum family 453
183408	1.47681714059735	3.22391805957449	1.04239079170289	467	RecA-superfamily ATPases implicated in signal transduction	T	P. aerophilum family 417, putative ATP binding
183409	1.40371292926208	2.96777253774144	1.00089781232044	1831	Predicted metal-dependent hydrolase (urease superfamily)	R	conserved hypothetical protein
183410	1.78389623942261	3.80462376114383	1.0039691879892	1064	Zn-dependent alcohol dehydrogenases	R	alcohol dehydrogenase (Zinc)
183411	1.41447821908598	3.10095641433312	1.0668299771763	2414	Aldehyde:ferredoxin oxidoreductase	C	aldehyde ferredoxin oxidoreductase (aor)
183412	1.30795068799781	2.84823337301928	1.01066079018033	399	Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogen	M	pleiotropic regulatory protein, conjectural
183413	1.29525654906883	3.11862163308932	1.07971438786508	-	-	-	hypothetical protein
183414	1.38719769381388	2.84796110933521	0.98373371479688	2151	Predicted metal-sulfur cluster biosynthetic enzyme	R	conserved hypothetical protein
183415	1.2854128118354	2.77996616894045	1.008951836879	425	Predicted redox protein, regulator of disulfide bond formation	O	conserved hypothetical protein
183416	1.35942155939641	2.92722697765932	1.12229511728305	-	-	-	paREP6 part 2, authentic frameshift
183417	1.45914171231949	2.75823211349408	1.09812518477018	-	-	-	paREP6 part 1, authentic frameshift
183418	1.31400715570319	2.78245231317459	0.955866437167348	1853	Conserved protein/domain typically associated with flavoprotein oxygenases, DIM6/NTAB family	R	conserved hypothetical protein
183419	1.42661153854778	3.16599884465301	1.099958864526	2425	Uncharacterized protein containing a von Willebrand factor type A (vWA) domain	R	conserved hypothetical protein
183420	1.36851662705718	2.88691080839064	1.00344803138378	-	-	-	conserved within P. aerophilum, part 2, authentic frameshift
183421	1.48365993933205	3.51050266243074	1.0974938162546	-	-	-	conserved within P. aerophilum, part 1, authentic frameshift
183422	1.40775971944661	3.09580566379263	1.05385320918887	-	-	-	paREP2b
183423	1.56817067195351	3.54324907527637	1.17256857522535	-	-	-	paREP2b
183424	1.32934880440409	2.91212402477078	0.984184544721478	-	-	-	hypothetical protein
183425	1.31125429791853	2.90091461877936	0.997739585809572	1960	Acyl-CoA dehydrogenases	I	acyl-CoA dehydrogenase
183426	1.37892998900248	3.08742649849398	1.08372085861117	503	Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins	F	phosphoribosyl transferase
183427	1.40468342133014	3.19156084429804	1.08835515723232	517	FOG: CBS domain	R	conserved protein with 2 CBS domains
183428	1.4159908943865	3.07035779509666	1.03578110907221	603	Predicted PP-loop superfamily ATPase	R	conserved hypothetical protein
183429	1.39156957988645	3.13592326974305	1.0795048542536	388	Predicted amidohydrolase	R	nitrilase, conjectural
183430	1.38238117336387	3.32565500212424	1.13136948658993	1280	Putative threonine efflux protein	E	conserved hypothetical protein
183431	1.35930005513613	3.04331291669836	1.04400678294711	1801	Uncharacterized conserved protein	S	conserved hypothetical protein
183432	1.32110164393405	2.91546375272808	1.01127697899739	-	-	-	hypothetical protein
183433	1.42609463478399	3.17660331255535	1.05901922045158	410	ABC-type branched-chain amino acid transport systems, ATPase component	E	branched-chain amino acid transport ATP-binding protein
183434	1.38954849627579	3.17517380107504	1.09263287065619	411	ABC-type branched-chain amino acid transport systems, ATPase component	E	branched-chain amino acid transport ATP-binding protein
183435	1.3710711066549	3.05732086532909	1.07616145509708	683	ABC-type branched-chain amino acid transport systems, periplasmic component	E	branched-chain amino acid binding protein
183436	1.45633321875056	3.50768318062794	1.18298652316033	559	Branched-chain amino acid ABC-type transport system, permease components	E	branched-chain amino acid transport permease protein
183437	1.50115830943767	3.46343136876205	1.19584081950486	4177	ABC-type branched-chain amino acid transport system, permease component	E	branched-chain amino acid transport permease protein
183438	1.35041605175088	2.85963349813123	0.97308028944764	450	Peroxiredoxin	O	peroxiredoxin, probable
183439	1.41365280555235	3.04632222528457	1.06856051051988	-	-	-	hypothetical protein
183440	1.47988580826802	3.21099858963044	1.12612104387023	1028	Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)	IQR	short chain dehydrogenase family
183441	1.460910332641	3.3666443667995	1.1181029234317	2410	Uncharacterized conserved protein	S	conserved hypothetical protein
183442	1.44804504063346	3.094766530223	1.08202093461715	665	Glycine/D-amino acid oxidases (deaminating)	E	conserved within P. aerophilum
183443	1.34943911418072	3.01042734729878	1.05220784061207	834	ABC-type amino acid transport/signal transduction systems, periplasmic component/domain	ET	bacterial extracellular solute-binding proteins, family 3
183444	1.25681864062801	2.70301906520754	1.0485541784786	199	Ribosomal protein S14	J	ribosomal protein S14
183445	1.40578677644422	2.99568041787772	1.00022906611591	96	Ribosomal protein S8	J	ribosomal protein S8
183446	1.33558719918884	2.90504351627451	1.00049983061004	1717	Ribosomal protein L32E	J	ribosomal protein L32
183447	1.41088472838651	2.94997854195943	1.02949898109388	2147	Ribosomal protein L19E	J	ribosomal protein L19
183448	1.4211778390113	2.985635854715	1.0521062672669	256	Ribosomal protein L18	J	ribosomal protein L18
183449	1.46944027799893	3.87635726059518	1.17256414407069	-	-	-	hypothetical protein
183450	1.47482357745973	3.17234220177498	0.997860413366426	-	-	-	paREP2b
183451	1.45252450474512	3.13451400358797	1.08156665575837	-	-	-	paREP2a
183452	1.30434182691259	2.67066711893828	0.935819191510475	-	-	-	paREP2a
183453	1.38597652656591	2.95662250559009	1.03230087464934	417	DNA polymerase elongation subunit (family B)	L	DNA-directed DNA polymerase (B3)
183454	1.61677360106609	3.44116961941824	1.16247208530816	-	-	-	hypothetical protein
183455	1.4205529821948	3.07844258548534	1.05651603381276	-	-	-	paREP2a
183456	1.38786400147898	2.95414326325437	1.02065725288671	358	DNA primase (bacterial type)	L	conserved protein (toprim domain)
183457	1.41190882269729	3.04710170144156	1.06563795835633	24	Methionine aminopeptidase	J	methionine aminopeptidase
183458	1.3527912091796	2.91483363973536	1.02566955720352	459	Chaperonin GroEL (HSP60 family)	O	thermosome (chaperonin) alpha subunit
183459	1.42344761918369	3.37253386004976	1.14744441021789	-	-	-	hypothetical protein
183460	1.47318130991421	3.24871102554772	1.09083417917795	630	Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella bios	NU	conjugal transfer protein, conjectural
183461	1.57076273299027	3.44198543516446	1.02330260755698	1405	Transcription initiation factor TFIIIB, Brf1 subunit/Transcription initiation factor TFIIB	K	transcription initiation factor IIB, conjectural
183462	1.46154120673021	3.20103840981911	1.05706352605533	-	-	-	hypothetical protein
183463	1.41963165774501	2.97065495293859	0.994474240665192	1958	Small nuclear ribonucleoprotein (snRNP) homolog	K	small nuclear ribonucleoprotein homolog (Sm-like)
183464	1.45546826881288	3.02005014988957	1.01054621113907	-	-	-	paREP2a
183465	1.43007750192476	2.89592097738969	0.985345581858517	-	-	-	paREP2a
183466	1.44584488900508	3.1265570854253	1.0264345829803	-	-	-	paREP2b
183467	1.48431138079662	3.18599544946869	1.10498872029081	-	-	-	paREP2b
183468	1.46144528143402	3.25464083214755	1.12845586928126	1201	Lhr-like helicases	R	ATP-dependent helicase, putative
183469	1.37484657001579	2.96079904861932	1.04380969944132	1838	Tartrate dehydratase beta subunit/Fumarate hydratase class I, C-terminal domain	C	fumarate hydratase class I beta subunit
183470	1.53762251174305	3.31573161689841	1.07047781534488	1951	Tartrate dehydratase alpha subunit/Fumarate hydratase class I, N-terminal domain	C	fumarate hydratase class I alpha subunit
183471	1.3888033427052	3.12704158340544	1.09636741492436	3609	Predicted transcriptional regulators containing the CopG/Arc/MetJ DNA-binding domain	K	conserved hypothetical protein
183472	1.42298816425115	2.97905660377621	1.00548563856644	1853	Conserved protein/domain typically associated with flavoprotein oxygenases, DIM6/NTAB family	R	hypothetical protein
183473	1.39384826654814	3.10557568582082	1.03648195257928	1977	Molybdopterin converting factor, small subunit	H	conserved hypothetical protein
183474	1.4015456212375	3.06832234803743	1.09820052078597	-	-	-	paREP2a
183475	1.50994070779811	3.25429824734994	1.06387954478272	720	6-pyruvoyl-tetrahydropterin synthase	H	hypothetical protein
183476	1.38573073632389	2.98989809335687	1.03247934976857	177	Predicted EndoIII-related endonuclease	L	conserved hypothetical protein
183477	1.74299908270195	3.89737127505524	1.09611571571778	-	-	-	hypothetical protein
183478	1.47547931017205	3.42177193767208	1.11302124865033	-	-	-	hypothetical protein
183479	1.37981396603599	2.84530497495561	1.00410044585899	-	-	-	hypothetical protein
183480	1.71903529875069	3.59262201563382	1.07984223178289	-	-	-	conserved within P. aerophilum
183481	1.55535154159507	3.24179456576852	1.071798967313	-	-	-	conserved hypothetical protein part 2, authentic frameshift
183482	1.68311441802093	3.73540312262062	1.07065771369484	535	Predicted Fe-S oxidoreductases	R	conserved hypothetical protein part 1, authentic frameshift
183483	1.65486338665431	3.39513280701344	1.03510283094365	-	-	-	hypothetical protein
183484	1.40641560458458	3.17467424617832	1.05431995647971	-	-	-	hypothetical protein
183485	1.47156693764016	3.22217269342027	1.08778023086024	2848	Uncharacterized conserved protein	S	conserved hypothetical protein
183486	1.56160662660358	3.45952709700192	1.1090311433731	2411	Uncharacterized conserved protein	S	conserved hypothetical protein
183487	1.5225504567318	3.31901636478758	1.12957704168938	1533	DNA repair photolyase	L	conserved hypothetical protein
183488	1.4715182767357	3.33588136650695	1.14481833251192	-	-	-	hypothetical protein
183489	1.43182986006423	3.15039754919903	1.09799311443904	433	Predicted ATPase	R	conserved within P. aerophilum
183490	1.44334090658506	3.2167305767	1.08842922946171	1339	Transcriptional regulator of a riboflavin/FAD biosynthetic operon	KH	conserved hypothetical protein
183491	1.4685417670587	3.33327960510121	1.12686701227642	235	Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases	G	fuculose-1-phosphate aldolase (fucA)
183492	1.33845299023722	2.94344604118535	1.03237666949664	644	Dehydrogenases (flavoproteins)	C	conserved hypothetical protein
183493	1.43915022107993	3.08970495907871	1.05097763321588	2220	Predicted Zn-dependent hydrolases of the beta-lactamase fold	R	conserved hypothetical protein
183494	1.37811151543434	3.02854672771715	1.04305479404702	-	-	-	hypothetical protein
183495	1.51865409219155	3.20537526437954	1.04429659179038	1591	Holliday junction resolvase - archaeal type	L	Holliday Junction Resolvase
183496	1.41771456542376	3.16671941437585	1.04993497357482	-	-	-	hypothetical protein
183497	1.38316391547703	3.01088199367701	1.0469656085815	2101	TATA-box binding protein (TBP), component of TFIID and TFIIIB	K	transcription initiation factor TFIID (TATA-binding)
183498	1.45846311339978	3.05624000857251	1.08170380297052	442	Prolyl-tRNA synthetase	J	prolyl-tRNA synthetase
183499	1.5074909963249	3.31897163365799	1.09405268932086	2519	tRNA(1-methyladenosine) methyltransferase and related methyltransferases	J	beta-aspartate methyltransferase (pimT), conjectural
183500	1.52274638507033	3.60303153540319	1.15153906510864	-	-	-	hypothetical protein
183501	1.40549262965847	2.95817991770653	0.991377291145869	4830	Ribosomal protein S26	J	ribosomal protein S26
183502	1.47537911518619	3.26924310918545	1.07582804839663	-	-	-	paREP2b, degenerate
183503	1.43081471072656	3.17073486341576	1.01494981464705	-	-	-	paREP2b, degenerate
183504	1.53968547366351	3.48483686193932	1.1195827725392	1901	Uncharacterized conserved protein	S	hypothetical protein
183505	1.48416426771795	3.48890400580728	1.13272882474253	558	Phosphatidylglycerophosphate synthase	I	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase (pgsA)
183506	1.45685894558812	3.1231208176569	1.03816837949443	5399	Uncharacterized protein conserved in archaea	S	conserved hypothetical protein
183507	1.53079035153113	3.33197868733849	1.06759763326312	-	-	-	conserved hypothetical protein
183508	1.4301421014112	3.06795840133442	1.08001973437103	417	DNA polymerase elongation subunit (family B)	L	DNA-directed DNA polymerase (B1)
183509	1.52766185282145	3.24206915850378	1.06217851764988	-	-	-	hypothetical protein
183510	1.47802732517775	3.22204416367234	1.11384165242074	1257	Hydroxymethylglutaryl-CoA reductase	I	3-hydroxy-3-methylglutaryl-coenzyme A reductase (HMG-CoA reductase)
183511	1.50678089205785	3.32254162214396	1.1219783571174	183	Acetyl-CoA acetyltransferase	I	acetyl-CoA C-acyltransferase
183512	1.41924338101334	3.03742904374983	1.0387677276991	1545	Predicted nucleic-acid-binding protein containing a Zn-ribbon	R	conserved protein associated with acetyl-CoA C-acyltransferase
183513	1.42775235846642	3.06194815807813	1.05876244838076	3425	3-hydroxy-3-methylglutaryl CoA synthase	I	3-oxoacyl-[acyl-carrier-protein] synthase
183514	1.4404107270153	3.16505366187046	1.04705022478066	640	Predicted transcriptional regulators	K	P. aerophilum family 453, possible regulatory protein
183515	1.46145071348152	3.276050768611	1.04971681135502	-	-	-	hypothetical protein
183516	1.39973365974593	2.96836762547227	1.02255892706358	4901	Ribosomal protein S25	J	conserved hypothetical protein
183517	1.45586098740995	3.2851296802595	1.12166955629407	-	-	-	hypothetical protein
183518	1.52438242047313	3.26177347683879	1.07343734508076	1313	Uncharacterized Fe-S protein PflX, homolog of pyruvate formate lyase activating proteins	R	pyruvate formate-lyase activating enzyme homolog
183519	1.53378804056664	3.26882241010426	1.06962096302252	3642	Mn2+-dependent serine/threonine protein kinase	T	conserved hypothetical protein
183520	1.39260630597065	3.04106433752057	1.06657672500175	-	-	-	hypothetical protein
183521	1.56736400796093	3.53756735751699	1.13488429214194	618	Exopolyphosphatase-related proteins	R	predicted phosphoesterase
183522	1.52987295625377	3.14870892138434	1.06061813565859	-	-	-	hypothetical protein
183523	1.44700889069162	3.17979953563241	1.07553366591624	1382	Prefoldin, chaperonin cofactor	O	conserved hypothetical protein
183524	1.75588715188005	3.93206171374817	1.14680311510874	-	-	-	hypothetical protein
183525	1.55475907360997	3.50383787151001	1.0851596455221	2136	Predicted exosome subunit/U3 small nucleolar ribonucleoprotein (snoRNP) component, contains IMP4 dom	JA	conserved hypothetical protein
183526	1.51138543773423	3.20275779708094	1.06435163290046	1997	Ribosomal protein L37AE/L43A	J	ribosomal protein L37
183527	1.37849189937185	3.01910587672774	1.05550872873267	2123	RNase PH-related exoribonuclease	J	3' exoribonuclease family protein
183528	1.44419630413041	3.22586634935702	1.11692118713119	689	RNase PH	J	3' exoribonuclease family protein
183529	1.48470697002132	3.21604290224901	1.04523480217358	1097	RNA-binding protein Rrp4 and related proteins (contain S1 domain and KH domain)	J	conserved hypothetical protein
183530	1.36800571256048	2.92020103094705	1.00941429112754	1500	Predicted exosome subunit	J	conserved hypothetical protein
183531	1.47731233438332	3.33643120936538	1.12047013910865	1992	Uncharacterized conserved protein	S	conserved hypothetical protein
183532	1.47547623225191	3.41138087393125	1.16292517595355	-	-	-	hypothetical protein
183533	1.63739928379482	3.27136542314376	1.07101902366228	-	-	-	hypothetical protein
183534	1.43903246258995	3.234411465844	1.06216912340171	1325	Predicted exosome subunit	J	conserved hypothetical protein
183535	1.5274847575386	3.33294484966703	1.03864320932492	-	-	-	hypothetical protein
183536	1.43479194899372	3.13591160898896	1.07117577070282	638	20S proteasome, alpha and beta subunits	O	proteasome alpha subunit
183537	1.47450980392845	3.20616254002413	1.11670051064142	1389	DNA topoisomerase VI, subunit B	L	DNA topoisomerase VI (type II ) subunit b
183538	1.41296179923969	3.07427849866641	1.05427952082597	1697	DNA topoisomerase VI, subunit A	L	DNA topoisomerase VI (type II ) subunit a
183539	1.50858984416343	3.34881415509364	1.13516015767179	704	Phosphate uptake regulator	P	conserved hypothetical protein
183540	1.44878474174759	3.1748268316441	1.12676832311824	-	-	-	hypothetical protein
183541	1.62995040743649	3.3236319741456	1.11593327962203	-	-	-	hypothetical protein
183542	1.53046342375514	3.33966124798717	1.03010564872305	2890	Methylase of polypeptide chain release factors	J	conserved hypothetical protein
183543	1.45224636528991	3.79455618866227	1.23279084766375	4742	Predicted transcriptional regulator	K	conserved protein (possible helix-turn-helix)
183544	1.58180572920937	3.51124881585842	1.08873804550703	1581	Archaeal DNA-binding protein	K	conserved hypothetical protein
183545	1.54879105247509	3.26759188784031	1.03899039051681	-	-	-	paREP2a
183546	1.49923235829267	3.12595836316541	1.03762643454572	-	-	-	paREP2b
183547	1.37725530028686	3.05184668982138	1.09369508163567	-	-	-	paREP2b
183548	1.51540155408492	3.35718361415325	1.14471693030528	43	3-polyprenyl-4-hydroxybenzoate decarboxylase and related decarboxylases	H	conserved hypothetical protein
183549	1.5314668258045	3.37407939226297	1.134395412776	1679	Uncharacterized conserved protein	S	conserved hypothetical protein
183550	1.48311296732877	3.3917543116223	1.12233042475351	1786	Uncharacterized conserved protein	S	conserved hypothetical protein
183551	1.53194284596229	3.37931013923177	1.10980956402987	4047	Uncharacterized protein conserved in archaea	S	conserved hypothetical protein
183552	1.52211710787398	3.33169826960165	1.09088984948202	2219	Eukaryotic-type DNA primase, large subunit	L	conserved protein (possible primase)
183553	1.52433384074074	3.46551554235875	1.11659191576889	2425	Uncharacterized protein containing a von Willebrand factor type A (vWA) domain	R	hypothetical protein
183554	1.57040176618311	3.50878616003027	1.1009637040346	714	MoxR-like ATPases	R	conserved hypothetical protein
183555	1.54107753130833	3.35553405057243	1.10882600065711	1341	Predicted GTPase or GTP-binding protein	R	conserved hypothetical protein
183556	1.50166929916508	3.29041852258537	1.10695710207111	1407	Predicted ICC-like phosphoesterases	R	conserved hypothetical protein
183557	1.51435047450765	3.28102431382158	1.08399183501989	-	-	-	hypothetical protein
183558	1.49711209911562	3.21890533041341	1.07471429321511	456	Acetyltransferases	R	N-acetyltransferase
183559	1.4707717076361	3.19298856725373	1.10822469765605	-	-	-	hypothetical protein
183560	1.50916033327579	3.33050671647472	1.07764925491291	-	-	-	hypothetical protein
183561	1.54597262277855	3.49743223381626	1.14213713110017	-	-	-	hypothetical protein
183562	1.45869929812584	3.20324057465255	1.1033666721111	436	Aspartate/tyrosine/aromatic aminotransferase	E	aspartate aminotransferase (aspC), conjectural
183563	1.48456589332427	3.17972818861879	1.05781169868326	494	NTP pyrophosphohydrolases including oxidative damage repair enzymes	LR	mutT/nudix family protein
183564	1.49381618056292	3.16187545365925	1.05424960612389	-	-	-	hypothetical protein
183565	1.42433658165274	3.04066179344332	1.04383222199715	2108	Uncharacterized conserved protein related to pyruvate formate-lyase activating enzyme	R	conserved hypothetical protein
183566	1.5428741958122	3.83419179327677	1.12740850491169	-	-	-	hypothetical protein
183567	1.83157933336761	3.96003741244127	1.15586465229905	-	-	-	hypothetical protein
183568	1.45785661046515	3.08369511919397	1.0890576464743	1996	DNA-directed RNA polymerase, subunit RPC10 (contains C4-type Zn-finger)	K	DNA-directed RNA polymerase subunit
183569	1.44312637685528	3.03676420343807	1.03497151414532	1056	Nicotinamide mononucleotide adenylyltransferase	H	conserved protein (possible cytidylyltransferase)
183570	1.35804979569135	2.94694211974405	1.02463418796496	10	Arginase/agmatinase/formimionoglutamate hydrolase, arginase family	E	agmatinase (speB)
183571	1.46652998881971	3.5017720582492	1.17508415832811	53	Predicted Co/Zn/Cd cation transporters	P	cation efflux system protein, conjectural
183572	1.52090400448682	3.17384424634403	1.05111368006744	-	-	-	paREP2b
183573	1.57367930155285	3.17926787128617	1.03827246193628	-	-	-	paREP2a
183574	1.45434741701272	3.09062772766601	1.07495829156043	423	Glycyl-tRNA synthetase (class II)	J	glycyl-tRNA synthetase
183575	1.444291541347	3.03454262877692	0.996257774999354	-	-	-	conserved protein
183576	1.48915897364235	3.21857400386653	1.08357056149194	1676	tRNA splicing endonuclease	J	tRNA intron endonuclease
183577	1.51975037373587	3.14346939743438	1.06376515320046	71	Molecular chaperone (small heat shock protein)	O	small heat shock protein, hsp20 homolog, conjectural
183578	1.44660207844066	2.89752331835695	0.979108681178495	-	-	-	hypothetical protein
183579	1.55269939607464	3.39427731943246	1.06723591849467	778	Nitroreductase	C	reductase, putative
183580	1.42868174128524	3.06440567541336	0.992804137733696	-	-	-	hypothetical protein
183581	1.44015696370648	3.1414333113813	1.05915488386068	5277	Actin and related proteins	Z	hypothetical protein
183582	1.47247759845422	3.2041493404505	1.05728450660281	-	-	-	actin-like protein
183583	1.46161556630353	3.18787388595627	1.11681312143964	419	ATPase involved in DNA repair	L	conserved hypothetical protein
183584	1.55882345149472	3.47280360006373	1.14187555433031	1378	Predicted transcriptional regulators	K	conserved hypothetical protein
183585	1.37297986012403	2.89344870021019	1.03433024476224	1964	Predicted Fe-S oxidoreductases	R	molybdenum cofactor biosynthesis protein (moaA)
183586	1.44040724409304	3.40695465200842	1.17254250053715	-	-	-	hypothetical protein
183587	1.54339616837728	3.52165208473715	1.15190211846955	1136	ABC-type antimicrobial peptide transport system, ATPase component	V	ABC transporter ATP-binding protein, putative
183588	1.45568716645032	3.40318560807305	1.1554707356579	577	ABC-type antimicrobial peptide transport system, permease component	V	conserved hypothetical protein
183589	1.4508197785299	3.36713210924371	1.1652593767858	2409	Predicted drug exporters of the RND superfamily	R	membrane protein, putative
183590	1.44206349572428	3.32446176959221	1.173614310077	-	-	-	hypothetical protein
183591	1.36747615213034	3.0661693278773	1.03790863408223	1011	Predicted hydrolase (HAD superfamily)	R	hypothetical protein
183592	1.36081520649814	2.68860855693176	1.01348863950224	-	-	-	hypothetical protein
183593	1.36246175638576	2.98984246004593	1.03181204276222	37	Predicted ATPase of the PP-loop superfamily implicated in cell cycle control	D	conserved hypothetical protein
183594	1.43966522241655	3.13410587804081	1.06950884597573	-	-	-	hypothetical protein
183595	1.42442446211157	3.01378541127051	1.07607610314634	525	Valyl-tRNA synthetase	J	valyl-tRNA synthetase
183596	1.39607313927064	3.03641300996807	1.08661176498747	1205	Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster	R	ATP-dependent helicase
183597	1.3418474470625	2.91120890746808	0.995990062250114	-	-	-	conserved within P. aerophilum
183598	1.5062344946026	3.44177499806576	1.14813159395621	1132	ABC-type multidrug transport system, ATPase and permease components	V	ABC transporter ATP-binding component, degenerate
183599	1.40092356392936	3.41238073409724	1.19177947047129	477	Permeases of the major facilitator superfamily	GEPR	resistance protein, conjectural
183600	1.38690760216207	2.88058741073095	1.00067833523492	1839	Uncharacterized conserved protein	S	conserved hypothetical protein
183601	1.36541042760007	2.93177471503744	1.02574558660989	735	Fe2+/Zn2+ uptake regulation proteins	P	ferric uptake regulator, putative
183602	1.46428455017517	3.09257717076353	1.09158641658826	665	Glycine/D-amino acid oxidases (deaminating)	E	proline dehydrogenase
183603	1.4692371419627	3.16738214296938	1.10640246413842	-	-	-	hypothetical protein
183604	1.3673923853817	2.89777918911846	1.02941162652402	45	Succinyl-CoA synthetase, beta subunit	C	succinyl-CoA synthetase beta subunit (sucC)
183605	1.46939109089403	3.17968631877306	1.10519000050113	74	Succinyl-CoA synthetase, alpha subunit	C	succinyl-CoA synthetase alpha subunit (sucD)
183606	1.42413040349624	3.1274068440674	1.09100401374137	1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR	KE	aminotransferase, class I
183607	1.53616529221155	3.333553665711	1.11728519505396	1171	Threonine dehydratase	E	threonine dehydratase (ilvA)
183608	1.48201780651327	2.99357499797554	1.0027464535563	2872	Predicted metal-dependent hydrolases related to alanyl-tRNA synthetase HxxxH domain	R	alanyl-tRNA synthetase related protein
183609	1.46508013975912	3.58656597362849	1.21120461690458	475	Kef-type K+ transport systems, membrane components	P	hypothetical protein
183610	1.4078120973253	3.12569345554326	1.04941190278958	-	-	-	hypothetical protein
183611	1.40197793251157	3.00933016032831	1.02104716429444	3294	Uncharacterized conserved protein	S	conserved hypothetical protein
183612	1.62512863985943	3.44589098993552	1.06787817057608	1324	Uncharacterized protein involved in tolerance to divalent cations	P	divalent cation tolerance protein, conjectural
183613	1.48333336566604	3.22268977304691	1.07850962293195	3635	Predicted phosphoglycerate mutase, AP superfamily	G	phosphonopyruvate decarboxylase, conjectural
183614	1.48225710613434	3.27517305432908	1.05960854314751	-	-	-	hypothetical protein
183615	1.51215848329351	3.21105682543847	1.04191262986344	1634	Uncharacterized Rossmann fold enzyme	R	conserved hypothetical protein
183616	1.48288742179261	3.64380069272073	1.21364748076025	477	Permeases of the major facilitator superfamily	GEPR	sugar transporter, conjectural
183617	1.47797792365486	3.23554816118943	1.08528404094383	1650	Uncharacterized protein conserved in archaea	S	conserved hypothetical protein
183618	1.51142187045619	3.29104726368073	1.10939327253433	1064	Zn-dependent alcohol dehydrogenases	R	alcohol dehydrogenase (Zinc)
183619	1.49606184338615	3.24501603396726	1.07061303184237	318	Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II	IQ	medium-chain acyl-CoA ligase
183620	1.4755575260742	3.09634061643701	1.04509549515771	624	Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases	E	possible succinyl-diaminopimelate desuccinylase
183621	1.51734882489058	3.38221874295138	1.1362221470962	778	Nitroreductase	C	conserved hypothetical protein
183622	1.42733407282744	3.50322876781204	1.1485987712895	-	-	-	hypothetical protein
183623	1.47316373312032	3.22218720898158	1.05137406836216	2226	Methylase involved in ubiquinone/menaquinone biosynthesis	H	ubiquinone/menaquinone biosynthesis methyltransferase (ubiE), conjectural
183624	1.43071057054544	3.10042273140515	1.07378144420846	-	-	-	P. aerophilum family 577 protein
183625	1.36916075880092	3.04868127413992	1.07404488800069	-	-	-	P. aerophilum family 562 protein
183626	1.59200356883362	3.4895081414847	1.09771866200285	-	-	-	hypothetical protein
183627	1.468301686925	3.28734177591612	1.05943034370543	-	-	-	hypothetical protein
183628	1.49456245792269	3.35686225839941	1.10289238130306	-	-	-	hypothetical protein
183629	1.56293521765255	3.64049828098052	1.18311717198783	2860	Predicted membrane protein	S	conserved hypothetical protein
183630	1.4299715194757	3.15470486724452	1.03294760296135	-	-	-	hypothetical protein
183631	1.47257667869462	3.36966831999878	1.11668734319156	-	-	-	conserved hypothetical protein
183632	1.43815431304848	3.09584244826863	1.08484786149012	1245	Predicted ATPase, RNase L inhibitor (RLI) homolog	R	RNase L inhibitor homolog
183633	1.37430658036758	3.46342815604319	1.16984634465845	-	-	-	hypothetical protein
183634	1.51568907283224	3.42398558904507	1.16180101921892	1215	Glycosyltransferases, probably involved in cell wall biogenesis	M	glycosyl transferase
183635	1.49158775638898	3.20767142498257	1.07002108726423	-	-	-	hypothetical protein
183636	1.46677316845882	3.07597585698818	0.983930849712425	-	-	-	hypothetical protein
183637	1.51931515957838	3.34421732528489	1.08230302852676	-	-	-	hypothetical protein
183638	1.45847615168725	3.20546817349873	1.04364404885469	1208	Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translati	MJ	sugar phospate transferase
183639	1.43960023350043	3.18678447729604	1.12651302137196	1201	Lhr-like helicases	R	ATP-dependent helicase
183640	1.51761133933121	3.5289348573422	1.11864823650089	-	-	-	hypothetical protein
183641	1.46949188586424	3.15154237383263	1.06126318111318	517	FOG: CBS domain	R	conserved protein with 4 CBS domains
183642	1.51215487465635	3.14524802352048	1.04748795035002	127	Xanthosine triphosphate pyrophosphatase	F	nucleoside-triphosphatase (NTPase)
183643	1.42428082105103	3.01040990200598	1.06642211674323	526	Thiol-disulfide isomerase and thioredoxins	OC	glutaredoxin-like protein
183644	1.3760812071393	2.84169967864273	0.975848661813348	-	-	-	hypothetical protein
183645	1.43281376116755	3.22011088134927	1.07980728764361	39	Malate/lactate dehydrogenases	C	malate dehydrogenase
183646	1.51655982204162	3.24504111141831	1.12843445338304	446	Uncharacterized NAD(FAD)-dependent dehydrogenases	R	NADH oxidase (nox)
183647	1.30529217721394	2.92066667320706	1.10522371099228	-	-	-	hypothetical protein
183648	1.42509258644631	3.32264746436198	1.13753840357805	382	4-hydroxybenzoate polyprenyltransferase and related prenyltransferases	H	4-hydroxybenzoate octaprenyltransferase (ubiA)
183649	1.55503622073349	3.77935902956204	1.23315215537627	477	Permeases of the major facilitator superfamily	GEPR	drug resistance protein, conjectural
183650	1.5144645583007	3.18247594220104	1.03786197572459	97	Ribosomal protein L6P/L9E	J	ribosomal protein L6
183651	1.47921648677973	3.42892443026219	1.13348198506441	2096	Uncharacterized conserved protein	S	conserved within P. aerophilum
183652	1.69591746179504	3.86980091739138	1.17100404167191	-	-	-	hypothetical protein
183653	1.77150827480097	3.7412006018668	1.05405117400811	517	FOG: CBS domain	R	conserved protein with 2 CBS domains
183654	1.45908411944823	3.29838343181369	1.06912509842459	589	Universal stress protein UspA and related nucleotide-binding proteins	T	universal stress protein family
183655	1.5693912585476	3.82399926496763	1.19999190564638	477	Permeases of the major facilitator superfamily	GEPR	transport protein part 2, authentic frameshift
183656	1.4593928426559	3.59796480230747	1.19034039352138	477	Permeases of the major facilitator superfamily	GEPR	transport protein part 1, authentic frameshift
183657	1.47255651872107	3.34819118922179	1.12263510491187	-	-	-	hypothetical protein
183658	1.47000004190538	3.67770947822262	1.19891486776572	730	Predicted permeases	R	hypothetical protein
183659	1.3709346725161	3.27378955573553	1.1055505999601	4023	Preprotein translocase subunit Sec61beta	U	hypothetical protein
183660	1.34609805316708	3.06668524084759	1.07320873220083	747	ABC-type dipeptide transport system, periplasmic component	E	dipeptide binding protein
183661	1.42175607629433	3.4255949025555	1.16764320730763	1173	ABC-type dipeptide/oligopeptide/nickel transport systems, permease components	EP	dipeptide transport permease
183662	1.45177330885889	3.47587108606114	1.19378842742981	601	ABC-type dipeptide/oligopeptide/nickel transport systems, permease components	EP	dipeptide transport permease
183663	1.52574448982073	3.27222119496213	1.05551616530358	-	-	-	hypothetical protein
183664	1.47838413150992	3.21475854137688	1.06235178124746	-	-	-	hypothetical protein
183665	1.41955636508	3.19013149681492	1.04075019409132	-	-	-	hypothetical protein
183666	1.4290691925153	3.14154905464102	1.03533674353927	455	ATPases involved in chromosome partitioning	D	hypothetical protein
183667	1.3437832791673	3.00514634524861	1.05451425193911	630	Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella bios	NU	type II secretion system protein, conjectural
183668	1.35074630829828	3.15961936403126	1.07874931093749	-	-	-	hypothetical protein
183669	1.36138981333414	3.10053469708779	1.11103314801625	-	-	-	hypothetical protein
183670	1.35946182380045	3.21821392477306	1.08728578199541	-	-	-	hypothetical protein
183671	1.45695021328666	3.36492304442283	1.18012699146607	-	-	-	hypothetical protein
183672	1.33831013975799	3.03522957901233	1.03706947450395	-	-	-	hypothetical protein
183673	1.43928651841539	3.50000591511525	1.16776265681231	-	-	-	hypothetical protein
183674	1.38583572070511	2.97496281780344	0.999127286002354	-	-	-	hypothetical protein
183675	1.42634923860069	3.18512589258296	1.10868586146396	-	-	-	hypothetical protein
183676	1.34064907098698	2.93328599200998	1.01369867213655	-	-	-	hypothetical protein
183677	1.40721237407993	3.11100179480569	1.10323092787889	-	-	-	hypothetical protein
183678	1.50296070105937	3.41744613355525	1.13902190321807	-	-	-	hypothetical protein
183679	1.37786285832818	3.16370664173851	1.07788058197884	-	-	-	hypothetical protein
183680	1.41099841368828	3.04032927128986	1.02101290138043	-	-	-	hypothetical protein
183681	1.5384032516957	3.47207776176592	1.14616459632048	1602	Uncharacterized conserved protein	S	conserved hypothetical protein
183682	1.48381723681236	3.35047982964472	1.11569856215286	626	Cystathionine beta-lyases/cystathionine gamma-synthases	E	cystathionine gamma-synthase
183683	1.49798825769345	3.3206840753317	1.04338059069611	569	K+ transport systems, NAD-binding component	P	potassium transport peripheral protein, conjectural
183684	1.46916714768494	3.26424670957454	1.08947730947234	-	-	-	potassium transport membrane protein, conjectural
183685	1.45020263134709	3.11890694530683	1.09977025267504	574	Phosphoenolpyruvate synthase/pyruvate phosphate dikinase	G	phosphoenolpyruvate synthase (pyruvate,water dikinase)
183686	1.5123732819063	3.24616643421107	1.07718757178939	-	-	-	hypothetical protein
183687	1.40293183521016	3.10836556557953	1.08286308601126	1032	Fe-S oxidoreductase	C	conserved hypothetical protein
183688	1.48298601723865	3.19458401872214	1.1320021845024	-	-	-	hypothetical protein
183689	1.47757540879426	3.3510365945756	1.12998196777332	-	-	-	hypothetical protein
183690	1.52535749627214	3.40662984452248	1.17260818692752	533	Metal-dependent proteases with possible chaperone activity	O	o-syaloglycoprotein endopeptidase
183691	1.28452793148207	2.67317356624401	1.01486826773745	1998	Ribosomal protein S27AE	J	ribosomal protein S27
183692	1.45250497752412	3.088853515647	1.0535605946648	2004	Ribosomal protein S24E	J	ribosomal protein S24
183693	1.45691992169417	3.3612644407746	1.06524963021738	3431	Predicted membrane protein	S	conserved hypothetical protein
183694	1.41642632179056	3.15011302852434	1.10253803749308	1032	Fe-S oxidoreductase	C	conserved hypothetical protein
183695	1.5404312021617	3.57459500334371	1.16668713813471	1266	Predicted metal-dependent membrane protease	R	conserved within P. aerophilum
183696	1.43898971364506	3.29735468624073	1.08463377192909	598	Mg2+ and Co2+ transporters	P	hypothetical protein
183697	1.43787504539925	3.11169575755084	1.09264822348489	2423	Predicted ornithine cyclodeaminase, mu-crystallin homolog	E	ornithine cyclodeaminase (arcB)
183698	1.46370207801122	3.17698180061402	1.10763228146856	1061	DNA or RNA helicases of superfamily II	KL	helicase, possible DNA repair
183699	1.39569632214363	3.07288602241891	1.05210693834767	3372	Uncharacterized conserved protein	S	conserved hypothetical protein
183700	1.43075754737882	3.19629079971108	1.10789112035352	3413	Predicted DNA binding protein	R	conserved hypothetical protein
183701	1.37676412748564	2.86316346674617	0.960106992751037	1145	Ferredoxin	C	ferredoxin
183702	1.4309862501889	3.1057051032478	1.09042187683406	1180	Pyruvate-formate lyase-activating enzyme	O	pyruvate formate-lyase activating enzyme homolog
183703	1.53394232694997	3.47711569396545	1.05893572590691	-	-	-	paREP13
183704	1.52680462808193	3.26187641278922	1.0824237333901	1435	Thymidine kinase	F	thymidine kinase
183705	1.4388545849176	3.56922764702409	1.22697510256535	1906	Uncharacterized conserved protein	S	conserved hypothetical protein
183706	1.34789035810358	3.0612221199709	1.07135692355397	4919	Ribosomal protein S30	J	ribosomal protein S30
183707	1.3911065786411	2.90549016344109	0.992213289692745	1720	Uncharacterized conserved protein	S	conserved hypothetical protein
183708	1.34689849321695	3.29879084637406	1.14370167093325	1055	Na+/H+ antiporter NhaD and related arsenite permeases	P	arsenite transport protein, conjectural
183709	1.48073062986373	3.30952249998997	1.08548864547054	159	Tryptophan synthase alpha chain	E	tryptophan synthase alpha subunit
183710	1.33663915235448	2.81273014154093	0.948586584411938	512	Anthranilate/para-aminobenzoate synthases component II	EH	anthranilate synthase component II
183711	1.43124058894124	3.15660807603869	1.09545565658494	147	Anthranilate/para-aminobenzoate synthases component I	EH	anthranilate synthase component I
183712	1.44148960537038	3.1722871406706	1.0856573641976	547	Anthranilate phosphoribosyltransferase	E	anthranilate phosphoribosyltransferase
183713	1.38428932761167	3.07350476189504	1.04424752614528	1350	Predicted alternative tryptophan synthase beta-subunit (paralog of TrpB)	R	tryptophan synthase beta subunit
183714	1.63398068171979	3.54357080909073	1.08426387489797	410	ABC-type branched-chain amino acid transport systems, ATPase component	E	ABC transporter ATP-binding component
183715	1.72067738463586	3.75453314928981	1.0415022112715	411	ABC-type branched-chain amino acid transport systems, ATPase component	E	branched-chain amino acid ABC transporter, ATP-binding protein, putative
183716	1.49228629404791	3.33240948337199	1.13916844700142	318	Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II	IQ	long-chain-fatty-acid--CoA ligase
183717	1.59636645241619	3.53312539749542	1.14339195361412	1804	Predicted acyl-CoA transferases/carnitine dehydratase	C	fatty acid co-A racemase, conjectural
183718	1.40727039015992	2.97535304277446	1.02808267753619	824	Predicted thioesterase	R	conserved hypothetical protein
183719	1.65001811462738	3.58354676058897	1.1112503942805	183	Acetyl-CoA acetyltransferase	I	acetyl-CoA C-acyltransferase
183720	1.6203989026306	3.41966559543917	0.969649512744939	1545	Predicted nucleic-acid-binding protein containing a Zn-ribbon	R	conserved protein associated with acetyl-CoA C-acyltransferase
183721	1.6684644470781	3.5456376352639	1.08537469013182	365	Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases	I	acetyl-coenzyme A synthetase
183722	1.41948225189981	2.99783678114896	1.05709011427998	1960	Acyl-CoA dehydrogenases	I	acyl-CoA dehydrogenase
183723	1.37630429255676	2.94886271977895	1.04491659141119	2080	Aerobic-type carbon monoxide dehydrogenase, small subunit CoxS/CutS homologs	C	molybdopterin binding oxidoreductase small and medium subunit
183724	1.38430371798257	3.0194608616751	1.07667016289807	1529	Aerobic-type carbon monoxide dehydrogenase, large subunit CoxL/CutL homologs	C	molybdopterin binding oxidoreductase large subunit
183725	1.45509700366798	3.25675081104772	1.07513963461896	1024	Enoyl-CoA hydratase/carnithine racemase	I	enoyl-CoA hydratase
183726	1.41357827880973	2.97570806349017	1.04902738751585	1012	NAD-dependent aldehyde dehydrogenases	C	aldehyde dehydrogenase
183727	1.35605795946745	2.93263267129101	0.986144458235563	365	Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases	I	acetyl-coenzyme A synthetase
183728	1.66564520489323	3.45023163743993	1.05502379975566	-	-	-	hypothetical protein
183729	1.65618276144867	3.65992572496512	1.13972748174171	-	-	-	hypothetical protein
183730	1.5074347469572	3.30959067665801	1.03239232043928	-	-	-	hypothetical protein
183731	1.3553644395282	2.88943432413768	1.04175216775861	183	Acetyl-CoA acetyltransferase	I	acetyl-CoA C-acyltransferase
183732	1.37397171047466	2.94055013988409	1.00615244762343	183	Acetyl-CoA acetyltransferase	I	acetyl-CoA C-acyltransferase
183733	1.27714759904129	2.64272425913883	0.918822042379214	1545	Predicted nucleic-acid-binding protein containing a Zn-ribbon	R	conserved protein associated with acetyl-CoA C-acyltransferase
183734	1.2800440385769	2.66635421463243	0.861393034573586	1545	Predicted nucleic-acid-binding protein containing a Zn-ribbon	R	conserved protein associated with acetyl-CoA C-acyltransferase
183735	1.38002159626377	2.91363502947341	1.00946024652962	1960	Acyl-CoA dehydrogenases	I	acyl-CoA dehydrogenase
183736	1.52671130450608	3.25437026023856	1.01356034260024	-	-	-	paREP7
183737	1.58108691411512	3.60970025947304	1.16305272386334	-	-	-	hypothetical protein
183738	1.45540207790663	3.11552822323239	1.05060595463831	-	-	-	hypothetical protein
183739	1.48399161497294	3.33057302082783	1.10923686930056	135	Phosphoribosylanthranilate isomerase	E	phosphoribosyl anthranilate isomerase
183740	2.04754447651997	4.27105164253738	1.13465170286503	-	-	-	paREP13
183741	1.44402793161042	3.41161710961872	1.0857365942632	1373	Predicted ATPase (AAA+ superfamily)	R	conserved hypothetical protein, frameshift
183742	1.42607243082518	3.18632618881674	1.10593044748708	-	-	-	conserved within P. aerophilum
183743	1.53315332963268	3.18865918770239	1.03025389901926	-	-	-	hypothetical protein
183744	1.47026728548729	3.28569661862794	1.0997869691248	2445	Uncharacterized conserved protein	S	paREP11
183745	1.29656225343793	2.77544356484743	0.972090587136167	1533	DNA repair photolyase	L	conserved hypothetical protein
183746	1.78568714288524	3.48278423494584	1.06915535916742	-	-	-	paREP7
183747	1.48934562943032	3.25921479905614	1.09298637139165	-	-	-	conserved hypothetical protein
183748	1.43525499319429	3.34916734613383	1.09176529881565	4243	Predicted membrane protein	S	conserved hypothetical protein
183749	1.49797111318188	3.52468857495634	1.17465509026244	-	-	-	conserved within P. aerophilum
183750	1.39332122543592	2.94165047601126	1.04001887488347	4992	Ornithine/acetylornithine aminotransferase	E	acetylornithine aminotransferase (argD)
183751	1.68311941536685	3.95864619085916	1.12562515348149	-	-	-	hypothetical protein
183752	1.30983289835046	2.74457830764343	0.999668917727358	1531	Uncharacterized protein conserved in archaea	S	conserved hypothetical protein
183753	1.40339315493267	3.11589266816448	1.07857920106514	62	Uncharacterized conserved protein	S	conserved hypothetical protein
183754	1.44806010774139	3.06952898466258	1.00085298829782	-	-	-	paREP8
183755	1.54214366093623	3.41795142577416	1.05518677794791	-	-	-	hypothetical protein
183756	1.55429696927399	3.39255091751605	1.11921203491368	675	Transposase and inactivated derivatives	L	paREP12
183757	1.44774695641721	3.25760996407487	1.0962096569325	-	-	-	hypothetical protein
183758	1.44936177745654	3.46972952605461	1.13121993354728	3374	Predicted membrane protein	S	conserved hypothetical protein
183759	1.49467963862408	3.58342114746092	1.19164437929903	4732	Predicted membrane protein	S	conserved hypothetical protein
183760	1.47856918366498	3.34401329834086	1.1022494503477	-	-	-	conserved hypothetical protein
183761	1.43097460970575	3.14571722205078	1.08252212270268	1122	ABC-type cobalt transport system, ATPase component	P	ribose ABC transporter, ATP-binding protein, putative
183762	1.38013348245468	3.53161803178887	1.17448929191859	-	-	-	hypothetical protein
183763	1.40305602904539	3.01671837111608	1.06106958603368	1992	Uncharacterized conserved protein	S	phosphomethylpyrimidine kinase
183764	1.43881849725428	3.07929434128382	1.04985860382386	212	5-formyltetrahydrofolate cyclo-ligase	H	conserved hypothetical protein
183765	1.40193840073949	3.30752981492853	1.15096457016809	1030	Membrane-bound serine protease (ClpP class)	O	conserved hypothetical protein
183766	1.49929467118522	3.36266175385109	1.13855249942886	1672	Predicted ATPase (AAA+ superfamily)	R	conserved hypothetical protein
183767	1.46158840054022	3.37653234938638	1.13015003539439	-	-	-	hypothetical protein
183768	1.40252087273791	3.16305230779054	1.12408288985715	4880	Secreted protein containing C-terminal beta-propeller domain distantly related to WD-40 repeats	R	conserved hypothetical protein
183769	1.47270240869692	3.22729714022373	1.06437717071101	1708	Predicted nucleotidyltransferases	R	paREP11
183770	1.51557847879046	3.33200448952593	1.17639554730717	-	-	-	hypothetical protein
183771	1.46010845521446	4.04388520197554	1.2814136108342	-	-	-	hypothetical protein
183772	1.39576364239977	3.07379174615451	1.0597805859051	-	-	-	hypothetical protein
183773	1.5416343331058	3.36702762535675	1.08120584775218	2250	Uncharacterized conserved protein related to C-terminal domain of eukaryotic chaperone, SACSIN	S	conserved hypothetical protein
183774	1.42614016763267	3.08134448301231	1.0662925212871	1708	Predicted nucleotidyltransferases	R	conserved hypothetical protein
183775	1.49573534103152	3.52265568396784	1.17609111114715	730	Predicted permeases	R	conserved hypothetical protein
183776	1.50873159060958	3.65082605066062	1.15730223506943	-	-	-	hypothetical protein
183777	1.38736750128122	2.95939564775192	1.03531090616446	174	Glutamine synthetase	E	glutamine synthetase
183778	1.36601389124421	2.86180183041587	0.999625425680231	17	Aspartyl/asparaginyl-tRNA synthetases	J	asparaginyl-tRNA synthetase
183779	1.44953963276065	3.55967131534578	1.22096755134308	477	Permeases of the major facilitator superfamily	GEPR	tetracycline resistance protein
183780	1.45210893030841	3.19301089428899	1.07860932434013	-	-	-	hypothetical protein
183781	1.34871519035755	2.72568454469523	1.01589920207298	1146	Ferredoxin	C	adenylylsulfate reductase beta subunit part 1, authentic frameshift
183782	1.33236982221768	2.9478055610725	1.01109375854287	1146	Ferredoxin	C	adenylylsulfate reductase beta subunit part 2, authentic frameshift
183783	1.31914980450438	2.85791605515218	1.0119103812414	1053	Succinate dehydrogenase/fumarate reductase, flavoprotein subunit	C	adenylylsulfate reductase alpha subunit part 1, authentic frameshift
183784	1.31245835639477	2.77085977734505	0.940780613120389	1053	Succinate dehydrogenase/fumarate reductase, flavoprotein subunit	C	adenylylsulfate reductase alpha subunit part 2, authentic frameshift
183785	1.41062405038297	2.9351734802079	1.02363736461969	622	Predicted phosphoesterase	R	conserved hypothetical protein
183786	1.32840455517858	2.7128637890476	0.920365349892873	2920	Dissimilatory sulfite reductase (desulfoviridin), gamma subunit	P	siroheme-sulfite reductase gamma subunit homolog
183787	1.37555094353032	3.01721916107208	1.02854299248904	2044	Predicted peroxiredoxins	R	conserved hypothetical protein
183788	1.37287364328179	2.93120850223638	1.02261730909615	-	-	-	glutathione-S-transferase homolog
183789	1.42439079336304	3.09520868223881	1.08216132519963	2221	Dissimilatory sulfite reductase (desulfoviridin), alpha and beta subunits	C	sulfite reductase beta subunit
183790	1.40705187244391	2.97516106636799	1.02533995052609	2221	Dissimilatory sulfite reductase (desulfoviridin), alpha and beta subunits	C	sulfite reductase alpha subunit
183791	1.38866454290105	2.94543741516973	1.01704213016899	7	Uroporphyrinogen-III methylase	H	uroporphyrin-III C-methyltransferase
183792	1.72687954138882	3.74829420247584	1.0150509701602	-	-	-	hypothetical protein
183793	1.59029302955987	3.3277261968828	1.01477405557962	175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase and related e	EH	phosphoadenosine phosphosulfate reductase (PAPS reductase)
183794	1.63058531030148	3.63412043560885	1.04837224633068	-	-	-	hypothetical protein
183795	1.66431477625728	3.59262761118132	1.08684818700469	155	Sulfite reductase, beta subunit (hemoprotein)	P	ferredoxin-nitrite reductase
183796	1.64070136803986	3.99007809565853	1.11744484740886	730	Predicted permeases	R	conserved hypothetical protein
183797	1.72550717213678	3.73217793586932	1.04021712945118	1977	Molybdopterin converting factor, small subunit	H	conserved hypothetical protein
183798	1.6857745522789	3.45372036045835	1.04633213684357	2897	Rhodanese-related sulfurtransferase	P	thiosulfate sulfurtransferase
183799	1.3369303197607	2.93205500792727	1.04116411641402	-	-	-	paREP1
183800	1.36197334432734	2.99440921375765	1.05023270283929	1797	Cobyrinic acid a,c-diamide synthase	H	cobyrinic acid a,c-diamide synthase (cbiA) part 2, authentic frameshift
183801	1.45017604745916	3.50338872852496	1.1989552400928	-	-	-	cobyrinic acid a,c-diamide synthase (cbiA) part 1, authentic frameshift
183802	1.34888801631813	2.97134190420681	1.0362232296528	-	-	-	conserved hypothetical protein
183803	1.47573547420614	3.21304863973258	1.02449815084798	-	-	-	hypothetical protein
183804	1.44881390324309	3.23157094377563	1.10073159382471	1587	Uroporphyrinogen-III synthase	H	uroporphyrinogen-III synthase (hemD), conjectural
183805	1.30370205533729	2.91090640725543	0.996381763306687	1587	Uroporphyrinogen-III synthase	H	uroporphyrinogen-III synthase (hemD), conjectural
183806	1.38325521772579	2.89381873989931	1.02186981756331	2221	Dissimilatory sulfite reductase (desulfoviridin), alpha and beta subunits	C	sulfite reductase alpha subunit
183807	1.37702947604669	2.96711707875838	1.02942995572043	2221	Dissimilatory sulfite reductase (desulfoviridin), alpha and beta subunits	C	sulfite reductase beta subunit
183808	1.51130806813641	3.31870786178342	1.05495144656896	-	-	-	hypothetical protein
183809	1.37745808537505	3.16664453355676	1.08191789906363	-	-	-	hypothetical protein
183810	1.4186601306449	3.06587514875402	1.03435573618325	-	-	-	hypothetical protein
183811	1.5577150579501	3.39321692083133	1.10566433734736	425	Predicted redox protein, regulator of disulfide bond formation	O	conserved hypothetical protein
183812	1.56084043159778	3.37561470948672	1.12217033901899	425	Predicted redox protein, regulator of disulfide bond formation	O	conserved hypothetical protein
183813	1.36001145278847	2.94555836736299	1.05016197623803	709	Selenophosphate synthase	E	conserved protein with C terminal acylphosphatase domain
183814	1.44951666620894	3.07675520606463	1.03603402885445	2210	Uncharacterized conserved protein	S	conserved hypothetical protein
183815	1.33451157209586	3.03557763427175	1.07755675466664	2250	Uncharacterized conserved protein related to C-terminal domain of eukaryotic chaperone, SACSIN	S	conserved within P. aerophilum
183816	1.39841106423898	3.00075942335572	1.05510616439601	-	-	-	hypothetical protein
183817	1.3807153206551	2.89164259852214	1.02912239591967	2046	ATP sulfurylase (sulfate adenylyltransferase)	P	sulfate adenylyltransferase
183818	1.30167627306618	2.71632168170028	0.975076163899556	-	-	-	conserved hypothetical protein
183819	1.30799328105353	3.23551835948034	1.1247950957917	2181	Nitrate reductase gamma subunit	C	nitrate reductase gamma subunit (narI)
183820	1.47937762942737	3.18791217025119	1.06578041950206	-	-	-	paREP13
183821	1.30326456913504	2.74799971269625	0.969673851641593	247	Fe-S oxidoreductase	C	iron-sulfur binding reductase, degenerate
183822	1.39855329320022	3.06030552580742	1.08394763380075	446	Uncharacterized NAD(FAD)-dependent dehydrogenases	R	flavoprotein reductase, conjectural
183823	1.31030533483348	3.03138261450455	1.06134982716198	2427	Uncharacterized conserved protein	S	conserved hypothetical protein
183824	1.34985046957772	2.97177615860939	1.01191811824228	-	-	-	hypothetical protein
183825	1.39739164519874	3.02219156189891	1.07338476622567	1249	Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and re	C	mercuric reductase
183826	1.38057812009315	2.93715657579868	1.00848631188818	-	-	-	hypothetical protein
183827	1.53715363437401	3.26805116705586	1.10520414173105	446	Uncharacterized NAD(FAD)-dependent dehydrogenases	R	flavoprotein reductase, conjectural
183828	1.45367509435713	3.58151828759946	1.20991477697391	428	Predicted divalent heavy-metal cations transporter	P	conserved hypothetical protein
183829	1.4900922551453	3.29715863691634	1.1063941886893	-	-	-	hypothetical protein
183830	1.6024528469284	3.56637165336543	1.11869380117573	-	-	-	hypothetical protein
183831	1.3980537047384	3.11675948546668	1.06140792738184	425	Predicted redox protein, regulator of disulfide bond formation	O	conserved hypothetical protein
183832	1.45915469714065	3.13501847856671	1.07118810451892	2210	Uncharacterized conserved protein	S	conserved hypothetical protein
183833	1.47770107913014	3.41174220643415	1.16966716759124	2391	Predicted transporter component	R	conserved hypothetical protein
183834	1.49570292853165	3.41883178164082	1.14444416752007	-	-	-	hypothetical protein
183835	1.48723549483821	3.34524915485766	1.09013554730802	1999	Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic sys	R	senC homolog
183836	1.32083525772848	3.04337555129301	1.01519079519627	-	-	-	conserved within P. aerophilum
183837	1.42771971662386	3.36996354749758	1.13978212359202	-	-	-	hypothetical protein
183838	1.47688740238197	3.26106305373369	1.0826205910174	320	Lipoate synthase	H	lipoic acid synthetase
183839	1.28960824296556	2.76888392187467	0.964003785281664	1071	Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha	C	pyruvate dehydrogenase E1 alpha subunit
183840	1.33906880702798	2.89507776964769	1.02621071170798	22	Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta s	C	pyruvate dehydrogenase E1 beta subunit
183841	1.3541442088827	2.90340981065375	1.02379302087509	508	Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and	C	pyruvate dehydrogenase E2 (dihydrolipoamide acetyltransferase)
183842	1.38197534236012	3.07502994255168	1.06453214856005	1249	Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and re	C	pyruvate dehydrogenase E3 (dihydrolipoamide dehydrogenase)
183843	1.44267453055684	3.09723810949413	1.0061462909023	321	Lipoate-protein ligase B	H	lipoate protein ligase B
183844	1.48391927979657	3.1928708170809	1.07327766912452	-	-	-	hypothetical protein
183845	1.51787915145637	3.44803511174322	1.10797348688304	-	-	-	conserved within P. aerophilum
183846	1.40300913188101	3.07616372798565	1.04415411207774	1741	Pirin-related protein	R	pirin homolog
183847	1.39912604966464	3.01708029300396	1.01761853123328	-	-	-	hypothetical protein
183848	1.43257834017881	3.0652291940201	0.980482704154474	-	-	-	formate dehydrogenase protein fdhE
183849	1.4435447197752	3.45351278383042	1.13928553614501	-	-	-	hypothetical protein
183850	1.50612910735108	3.16191969164646	1.07151226298198	437	Fe-S-cluster-containing hydrogenase components 1	C	formate dehydrogenase beta subunit
183851	1.4413283605129	3.14780555030585	1.11886790753569	243	Anaerobic dehydrogenases, typically selenocysteine-containing	C	formate dehydrogenase alpha subunit
183852	1.48339597492093	3.27019508397888	1.09822280878862	1526	Uncharacterized protein required for formate dehydrogenase activity	C	formate dehydrogenase delta subunit
183853	1.59043734067269	3.5973364562953	1.1258191638114	-	-	-	hypothetical protein
183854	1.41389007898418	3.026527380104	1.00505934297111	1832	Predicted CoA-binding protein	R	conserved hypothetical protein
183855	1.46423465358636	3.20611858699869	1.10727394891711	1975	Xanthine and CO dehydrogenases maturation factor, XdhC/CoxF family	O	conserved hypothetical protein
183856	1.4459547443279	3.01194462143347	0.996108494397433	-	-	-	paREP8
183857	1.41413362799198	3.11151132381847	1.08598903896785	2102	Predicted ATPases of PP-loop superfamily	R	conserved hypothetical protein
183858	1.34813944166546	2.97002278870055	1.01345067187417	-	-	-	paREP8
183859	1.45165596534588	3.1094482992959	1.0212581247463	2402	Predicted nucleic acid-binding protein, contains PIN domain	R	conserved hypothetical protein
183860	1.41608387508815	3.26065319858988	1.07598892507594	-	-	-	conserved within P. aerophilum
183861	1.4731356998761	3.40949148805599	1.10392906186851	1846	Transcriptional regulators	K	transcriptional regulator, conjectural
183862	1.37709033429269	2.92911477894747	0.989241979790683	3945	Uncharacterized conserved protein	S	conserved hypothetical protein
183863	1.62307268025475	3.88189896939505	1.15568318713502	-	-	-	hypothetical protein
183864	1.38152665123931	3.3215437815219	1.09108053014656	1846	Transcriptional regulators	K	transcriptional regulator, conjectural
183865	1.39818420814586	3.03846157123052	1.06601909517653	2514	Predicted ring-cleavage extradiol dioxygenase	R	conserved hypothetical protein
183866	1.29792101458092	2.8195236531037	0.987638884560324	3193	Uncharacterized protein, possibly involved in utilization of glycolate and propanediol	R	glcG homolog
183867	1.32695228421075	2.9373028364576	1.01162872575651	604	NADPH:quinone reductase and related Zn-dependent oxidoreductases	CR	alcohol dehydrogenase (Zinc)
183868	1.25010977182688	2.60839473169618	0.901490069174931	179	2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway)	Q	2-hydroxyhepta-2,4-diene-1,7-dioate isomerase, conjectural
183869	1.47913931991596	3.30247727920653	1.12364309736901	2133	Glucose/sorbosone dehydrogenases	G	conserved hypothetical protein
183870	1.4391326279616	3.07478556866825	1.05427117678936	479	Succinate dehydrogenase/fumarate reductase, Fe-S protein subunit	C	iron-sulfur protein, putative
183871	1.61991436532385	3.52205283474039	1.11367634679434	517	FOG: CBS domain	R	conserved protein with 2 CBS domains
183872	1.32155007071816	2.82087909785265	0.999725142419352	2368	Aromatic ring hydroxylase	Q	4-hydroxyphenylacetate-3-hydroxylase, conjectural
183873	1.64306548485208	3.60277490877448	1.07959560736347	2210	Uncharacterized conserved protein	S	conserved within P. aerophilum
183874	1.47964828147822	3.19103068209054	1.0872749854627	3546	Mn-containing catalase	P	pseudocatalase
183875	1.54080186435553	3.66906333007468	1.11038513153069	3639	ABC-type phosphate/phosphonate transport system, permease component	P	transport protein, putative
183876	1.51370535513601	3.39463956210207	1.10743217464781	1136	ABC-type antimicrobial peptide transport system, ATPase component	V	iron (III) ABC transporter ATP-binding protein, putative
183877	1.48534159351767	3.22620620607369	1.08950509934555	3221	ABC-type phosphate/phosphonate transport system, periplasmic component	P	hypothetical protein
183878	1.43542353329567	2.93928435334635	0.974013240391436	2406	Protein distantly related to bacterial ferritins	R	conserved hypothetical protein
183879	1.42120926399046	2.96690975043898	1.02049973299779	1433	Uncharacterized conserved protein	S	hypothetical protein
183880	1.46504631417047	3.20170646476724	1.12147513308696	665	Glycine/D-amino acid oxidases (deaminating)	E	conserved hypothetical protein
183881	1.66134393991344	3.59016374446192	1.13867432220248	-	-	-	hypothetical protein
183882	1.27028516254558	2.77361889319404	0.974162768507796	1145	Ferredoxin	C	ferredoxin oxidoreductase, conjectural
183883	1.37551577660319	2.9782721295741	1.04755243703876	-	-	-	hypothetical protein
183884	1.35400663220684	2.94791684239881	1.07354093315342	-	-	-	hypothetical protein
183885	1.31607481641333	2.7673519015355	0.964418383672005	425	Predicted redox protein, regulator of disulfide bond formation	O	conserved hypothetical protein
183886	1.43813795832003	3.12794260506683	1.04547360728053	2210	Uncharacterized conserved protein	S	conserved hypothetical protein
183887	1.38542107899467	2.99065881241346	1.0217759554045	2154	Pterin-4a-carbinolamine dehydratase	H	4a-hydroxytetrahydrobiopterin dehydratase
183888	1.4187934998439	3.35200759882366	1.15165143156714	1230	Co/Zn/Cd efflux system component	P	cation efflux system protein
183889	1.48171593653812	3.39853924785572	1.12008833614727	-	-	-	paREP1
183890	1.32735989020566	2.87112715047673	1.00968482454773	1331	Highly conserved protein containing a thioredoxin domain	O	conserved hypothetical protein
183891	1.39239847634609	3.10508179272995	1.03658289001613	-	-	-	paREP1
183892	1.4337945361568	3.66305044246909	1.20613983655674	-	-	-	P. aerophilum family 79 protein
183893	1.71850843030664	3.85095696713659	1.15060044761016	-	-	-	P. aerophilum family 66 protein, interruption-C
183894	1.42751015819689	3.01399490658814	0.993447873490516	-	-	-	P. aerophilum family 66 protein, interruption-N
183895	1.38815157478882	3.01427258818609	1.02943933636209	4741	Predicted secreted endonuclease distantly related to archaeal Holliday junction resolvase	F	conserved hypothetical protein
183896	1.41177876032065	3.02074641571467	1.06023830399792	-	-	-	selenium binding protein, probable
183897	1.41285810053074	3.48715083886273	1.13820685107702	-	-	-	hypothetical protein
183898	1.3692477154163	3.02682591359439	1.01879885424298	1225	Peroxiredoxin	O	bacterioferritin comigratory protein homolog
183899	1.35911750289245	2.78951925113958	0.972174262974703	2897	Rhodanese-related sulfurtransferase	P	thiosulfate sulfurtransferase
183900	1.31374361382167	2.76704349116705	0.998143082817177	2146	Ferredoxin subunits of nitrite reductase and ring-hydroxylating dioxygenases	PR	Rieske iron sulfur protein, putative
183901	1.37930455657565	2.81334122279885	1.01079020952169	-	-	-	hypothetical protein
183902	1.33117308688348	2.88894178470953	1.01950201412455	1014	Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, gamma subunit	C	2-oxoacid ferredoxin oxidoreductase alpha subunit
183903	1.36984198350667	2.90407612813186	1.03608356233445	1013	Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, beta subunit	C	2-oxoacid ferredoxin oxidoreductase beta subunit
183904	1.57646306723394	3.54603513492522	1.12206284092496	-	-	-	paREP5a
183905	1.52819027228002	3.19085468969177	0.960929003432671	-	-	-	paREP5b
183906	1.46941889551931	3.31063435390939	1.10188181718291	3370	Uncharacterized protein conserved in archaea	S	conserved hypothetical protein
183907	1.38650490417097	3.10807291448605	1.09388931791132	114	Fumarase	C	fumarate hydratase class II
183908	1.56968076751521	3.38603114573107	1.07677934086915	492	Thioredoxin reductase	O	thioredoxin reductase (trxB)
183909	1.48246081771798	2.92452590171366	1.02282062332944	3350	Uncharacterized conserved protein	S	ribosomal protein L24, conjectural
183910	1.53766218231645	3.0855362980821	0.947902564206039	-	-	-	hypothetical protein
183911	1.4522287535443	3.3265210239457	1.0982686564366	-	-	-	hypothetical protein
183912	1.56876495245498	3.4367937861487	1.07402914944572	3019	Predicted metal-binding protein	R	hypothetical protein
183913	1.6298372478273	3.89551043561619	1.17650795962953	785	Cytochrome c biogenesis protein	O	cytochrome C-type biogenesis protein (ccdA), conjectural
183914	1.51091988776437	3.77597805767835	1.12010638190597	-	-	-	hypothetical protein
183915	1.31261550147208	3.01607450036603	0.983871369026062	4113	Predicted nucleic acid-binding protein, contains PIN domain	R	conserved hypothetical protein
183916	1.51924343385288	3.23552325225226	0.96796942518729	-	-	-	hypothetical protein
183917	1.38422418352961	3.17501078030234	1.13012419029965	-	-	-	conserved within P. aerophilum, degenerate
183918	1.41784067282009	3.1055629640544	1.11088428000977	2217	Cation transport ATPase	P	cation-transporting ATPase (P-type)
183919	1.48548864405687	3.32992161648874	1.09698922695754	2445	Uncharacterized conserved protein	S	conserved hypothetical protein
183920	1.48288962884185	3.25151167582462	1.0792698936213	1708	Predicted nucleotidyltransferases	R	paREP11
183921	1.40304101825578	3.39671818813097	1.16670371178915	2245	Predicted membrane protein	S	hypothetical protein
183922	1.44253086977835	3.0403066750012	1.09040762565399	-	-	-	hypothetical protein
183923	1.43633431607038	3.47230924583733	1.17964860537902	477	Permeases of the major facilitator superfamily	GEPR	transport protein, putative
183924	1.46073728109331	3.41878684487973	1.17843846492169	4756	Predicted cation transporter	R	conserved hypothetical protein
183925	1.62054731829176	3.63632354279726	1.12311039326065	675	Transposase and inactivated derivatives	L	paREP12, degenerate
183926	1.40671256515654	3.14554897434562	1.02585675311943	-	-	-	conserved hypothetical protein
183927	1.38873339172956	2.97375311080607	1.05281351316233	-	-	-	hypothetical protein
183928	1.40454129215868	2.97935227061326	1.07679763007688	147	Anthranilate/para-aminobenzoate synthases component I	EH	hypothetical protein
183929	1.35170222527965	2.97551016469359	1.00844786631864	630	Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella bios	NU	type II secretion system protein, conjectural
183930	1.4040957955574	3.45496835293892	1.19516892952861	2064	Flp pilus assembly protein TadC	NU	hypothetical protein
183931	1.43528672936138	3.23789994704455	1.05239255401124	-	-	-	P. aerophilum family 453
183932	1.3630027244791	3.1894185211897	1.08638582941771	-	-	-	P. aerophilum family 453
183933	1.41499036998255	3.10765751436532	1.01628080674506	2250	Uncharacterized conserved protein related to C-terminal domain of eukaryotic chaperone, SACSIN	S	conserved hypothetical protein
183934	1.45709757151554	3.3442249849768	1.08172808709053	1708	Predicted nucleotidyltransferases	R	conserved hypothetical protein
183935	1.32037085720632	2.93197401854794	1.05852095799315	1136	ABC-type antimicrobial peptide transport system, ATPase component	V	ABC transporter ATP-binding protein, putative
183936	1.44637657371336	3.1978369551687	1.02996867982597	-	-	-	paREP5ab, internal deletion and authentic frameshift
183937	1.50407532991011	3.37306390286232	1.11398007397596	-	-	-	hypothetical protein
183938	1.42392589284337	3.1513854704255	1.08415191214873	-	-	-	conserved within P. aerophilum
183939	1.3930669691158	3.04211420703068	1.03461684220686	-	-	-	hypothetical protein
183940	1.55217415351957	3.35738192480566	1.09445375877736	608	Single-stranded DNA-specific exonuclease	L	conserved hypothetical protein part 1, authentic frameshift
183941	1.42537668392935	3.04979427343334	1.04162998284112	608	Single-stranded DNA-specific exonuclease	L	conserved hypothetical protein part 2, authentic frameshift
183942	1.3688501240072	3.08189315078127	1.09664772835607	616	Periplasmic serine proteases (ClpP class)	OU	protease IV, conjectural
183943	1.39623668568967	3.13833136299957	1.10132284494876	265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain	O	serine protease
183944	1.32837188397301	2.83533302078264	0.985697687746945	1917	Uncharacterized conserved protein, contains double-stranded beta-helix domain	S	conserved hypothetical protein
183945	1.41605954954845	3.20385786953331	1.06285796990164	-	-	-	P. aerophilum family 453, possible regulatory protein
183946	1.40033673261609	3.08704823969211	1.06622936448552	624	Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases	E	peptidase family M20/M25/M40
183947	1.44884020876853	3.16697264169844	1.08730866189609	467	RecA-superfamily ATPases implicated in signal transduction	T	P. aerophilum family 417, putative ATP binding
183948	1.33286999108246	3.10554374666689	1.05759584654351	-	-	-	P. aerophilum family 453
183949	1.32974904682122	2.92197430369761	1.03597970948769	-	-	-	hypothetical protein
183950	1.3503762323235	2.65270066017834	1.16412983196991	-	-	-	paREP8, degenerate
183951	1.40663183886786	3.04495550130782	1.04283763305768	500	SAM-dependent methyltransferases	QR	conserved hypothetical protein
183952	1.42658047907964	3.1528896114856	1.07866131213822	1986	Uncharacterized conserved protein	S	conserved hypothetical protein
183953	1.345540879934	2.74735309029217	1.08478035903353	-	-	-	hypothetical protein
183954	1.60512814890674	3.52859353038412	1.12553237241405	-	-	-	hypothetical protein
183955	1.31197630018811	2.82569536720572	0.987940009371527	-	-	-	paREP8
183956	1.47524913227729	3.39420695801678	1.12312946724714	-	-	-	hypothetical protein
183957	1.49969817632904	3.49458682571641	1.15759536104633	-	-	-	paREP1
183958	1.2955779619019	2.81009272998977	0.961458240024115	214	Pyridoxine biosynthesis enzyme	H	stress induced protein, conjectural
183959	1.35563695774872	2.93448313605265	1.02652509843934	311	Predicted glutamine amidotransferase involved in pyridoxine biosynthesis	H	conserved hypothetical protein
183960	1.31374518950807	2.8039252158867	0.954075589596012	-	-	-	paREP1
183961	1.49721192946022	3.60553625948282	1.19199722967515	-	-	-	conserved within P. aerophilum
183962	1.40433390819633	3.22624002676666	1.06967722601392	-	-	-	hypothetical protein
183963	1.3591367301513	3.34604447223588	1.17020297170003	-	-	-	conserved hypothetical protein
183964	1.57581892142715	3.42270749483664	1.10598552550481	-	-	-	hypothetical protein
183965	1.42627403923365	3.05548909671752	1.06388085656702	1145	Ferredoxin	C	polyferredoxin
183966	1.43900046063714	3.091070379976	1.08767790534734	4670	Acyl CoA:acetate/3-ketoacid CoA transferase	I	coA transferase, putative
183967	1.4468496912344	3.14745555014579	1.01386073198595	2002	Regulators of stationary/sporulation gene expression	K	conserved hypothetical protein
183968	1.52376513603306	3.37205853345948	1.04516704433298	1848	Predicted nucleic acid-binding protein, contains PIN domain	R	conserved hypothetical protein
183969	1.38857113769671	3.06818245349514	1.05015308914193	-	-	-	paREP8
183970	1.47218551977795	3.26624553605038	1.11658807525872	1028	Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)	IQR	short chain dehydrogenase
183971	1.40234979959851	3.2654424404658	1.08286664805774	2427	Uncharacterized conserved protein	S	conserved hypothetical protein
183972	1.3494127077981	2.9453659137515	1.01705752743408	446	Uncharacterized NAD(FAD)-dependent dehydrogenases	R	conserved hypothetical protein
183973	1.45631031185055	3.65766222563961	1.24289256925297	3301	Formate-dependent nitrite reductase, membrane component	P	molybdopterin oxidoreductase, membrane subunit
183974	1.51113677556188	3.12421296237425	1.0127483086462	437	Fe-S-cluster-containing hydrogenase components 1	C	molybdopterin oxidoreductase, iron-sulfur binding subunit
183975	1.42073395820964	3.13172047183501	1.08668018325398	243	Anaerobic dehydrogenases, typically selenocysteine-containing	C	molybdopterin oxidoreductase, molybdopterin binding subunit part 2, authentic frameshift
183976	1.41572099908134	3.09381103189749	1.08656422448079	243	Anaerobic dehydrogenases, typically selenocysteine-containing	C	molybdopterin oxidoreductase, molybdopterin binding subunit part 1, authentic frameshift
183977	1.6236577961118	3.34849144664141	1.07775585934421	-	-	-	hypothetical protein
183978	1.42703824595922	3.25659675417845	1.11520056017793	-	-	-	conserved hypothetical protein
183979	1.68074202241805	3.91157587044101	1.1493914983186	-	-	-	hypothetical protein
183980	1.42377729024005	3.22492799474421	1.05151964154514	-	-	-	paREP5ab, internal deletion and authentic frameshift
183981	1.6111623384942	3.55184031213521	1.13087137651791	-	-	-	hypothetical protein
183982	1.53979317850778	3.26659930441252	1.16127337680871	-	-	-	hypothetical protein
183983	1.41319319391217	3.10116590527837	1.0949744981047	-	-	-	paREP6
183984	1.412413582522	3.07427589051022	1.07154131997459	-	-	-	conserved hypothetical protein
183985	1.46446390979199	3.47548121196834	1.14998735421092	-	-	-	paREP6
183986	1.46139707678426	3.23865629985145	1.11501976147231	-	-	-	P. aerophilum family 1964 protein
183987	1.42273301637499	3.07768354380861	1.03465893070057	5550	Predicted aspartyl protease	O	conserved within P. aerophilum
183988	1.55295884389188	3.36429928829812	1.1044574714412	-	-	-	conserved within P. aerophilum
183989	1.45143280879144	3.33679405038695	1.09940008779228	-	-	-	hypothetical protein
183990	1.46490074035208	3.1746457356808	1.10279933213565	243	Anaerobic dehydrogenases, typically selenocysteine-containing	C	molybdopterin oxidoreductase, molybdopterin binding subunit
183991	1.52896373181219	3.3175027486598	1.09293923675873	437	Fe-S-cluster-containing hydrogenase components 1	C	molybdopterin oxidoreductase, iron-sulfur binding subunit
183992	1.48156585448354	3.69288021455419	1.1869757104161	3301	Formate-dependent nitrite reductase, membrane component	P	molybdopterin oxidoreductase, membrane subunit
183993	1.5014548432255	3.16541186105346	1.04946188991569	-	-	-	paREP1
183994	1.48648212807876	3.23101535044738	1.1060168644681	517	FOG: CBS domain	R	conserved protein with 2 CBS domains
183995	1.41330620261024	3.016773783187	1.06359024873805	365	Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases	I	acetyl-coenzyme A synthetase
183996	1.55444944837187	3.59920268022486	1.13438072996707	517	FOG: CBS domain	R	conserved protein with CBS domains
183997	1.55389556467207	3.61082824285661	1.18257181359733	477	Permeases of the major facilitator superfamily	GEPR	sugar transporter, putative
183998	1.3755829155293	2.93310022886819	1.04216852278534	365	Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases	I	acetyl-coenzyme A synthetase
183999	1.32396239260485	2.95706900187722	1.05740635469254	460	Homoserine dehydrogenase	E	homoserine dehydrogenase
184000	1.41945757360688	3.16318865670302	1.06199682005776	-	-	-	paREP1
184001	1.59993735831281	3.36336622835373	1.06353831181819	2445	Uncharacterized conserved protein	S	paREP11
184002	1.48425828984075	3.15857617020168	1.06229914658268	-	-	-	conserved within P. aerophilum
184003	1.61540172924951	3.26345541545996	1.01076603959114	-	-	-	hypothetical protein
184004	1.4451228859233	3.15311788397552	1.06539175147568	-	-	-	hypothetical protein
184005	1.41196442689311	3.11288129169455	1.07051536644714	136	Aspartate-semialdehyde dehydrogenase	E	aspartate-semialdehyde dehydrogenase (asd)
184006	1.41321591180318	3.14474820343657	1.08803287791611	527	Aspartokinases	E	aspartate kinase
184007	1.41448501509393	3.08399238489463	1.04882357973455	498	Threonine synthase	E	threonine synthase
184008	1.34665667590355	3.09354331779881	1.06653402341921	-	-	-	hypothetical protein
184009	1.39295529690471	3.04654849478841	1.05152822401447	2	Acetylglutamate semialdehyde dehydrogenase	E	N-acetyl-gamma-glutamyl-phosphate reductase (argC)
184010	1.47969591520803	3.28897179597474	1.11098074248428	548	Acetylglutamate kinase	E	acetylglutamate kinase (argB)
184011	1.49354207052367	3.07106014054616	1.02670868570787	-	-	-	hypothetical protein
184012	1.39202388658615	2.99469586890288	1.04738331621335	137	Argininosuccinate synthase	E	argininosuccinate synthase (argG)
184013	1.3509495099512	2.75435853575145	1.0419642747363	-	-	-	hypothetical protein
184014	1.39052274726133	3.10096230831733	1.07775695224141	165	Argininosuccinate lyase	E	argininosuccinate lyase (argH)
184015	1.5783541745655	3.86424038072453	1.25510620661348	3371	Predicted membrane protein	S	conserved hypothetical protein
184016	1.42305429511355	3.10015477247649	1.08507783372191	3842	ABC-type spermidine/putrescine transport systems, ATPase components	E	spermidine/putrescine transport ATP-binding protein
184017	1.38724672821523	3.53158951820327	1.17084486998672	1176	ABC-type spermidine/putrescine transport system, permease component I	E	spermidine/putrescine transport permease protein
184018	1.39011717507957	3.32341761844714	1.10614546249433	1177	ABC-type spermidine/putrescine transport system, permease component II	E	spermidine/putrescine transport permease protein
184019	1.5269561758031	3.33018069025633	1.1198168688305	1042	Acyl-CoA synthetase (NDP forming)	C	conserved hypothetical protein, authentic frameshift
184020	1.44028317438388	3.28247649150936	1.11122555937461	1651	Protein-disulfide isomerase	O	conserved within P. aerophilum
184021	1.48978651968329	3.11065173170308	1.00288477289018	517	FOG: CBS domain	R	conserved protein with 2 CBS domains
184022	1.3690519855453	3.08157397366986	1.08220051956992	2425	Uncharacterized protein containing a von Willebrand factor type A (vWA) domain	R	conserved hypothetical protein
184023	1.33210204044482	2.97183716054858	1.04347625292241	714	MoxR-like ATPases	R	conserved hypothetical protein
184024	1.45983697442281	3.25785381623675	1.11352916766208	-	-	-	hypothetical protein
184025	1.4244124942011	3.14074653502049	1.11182132932751	433	Predicted ATPase	R	conserved hypothetical protein
184026	1.42985752077911	3.11647288391065	1.08458158366263	420	DNA repair exonuclease	L	exonuclease sbcD, conjectural
184027	1.40250262157861	3.07461852814683	1.10117320905597	419	ATPase involved in DNA repair	L	purine NTPase, probable
184028	1.33618051089658	2.79384962879238	0.973582660906153	1503	Peptide chain release factor 1 (eRF1)	J	peptide chain release factor aRF subunit 1
184029	1.43907420229492	3.2407598163821	1.09942706260806	51	Ribosomal protein S10	J	ribosomal protein S10
184030	1.41087767214326	3.22673777762818	1.11613599820865	496	Predicted acid phosphatase	R	surE stationary-phase survival protein homolog
184031	1.4367851077571	3.28857035605709	1.11542690118844	-	-	-	hypothetical protein
184032	1.54760065819188	3.49951307968971	1.12779441690046	640	Predicted transcriptional regulators	K	P. aerophilum family 453, possible regulatory protein
184033	1.45976803659532	3.21644037464897	1.07276103363299	1590	Uncharacterized conserved protein	S	conserved hypothetical protein
184034	1.39328597046431	3.11531261290769	1.0774653819743	329	Dihydrodipicolinate synthase/N-acetylneuraminate lyase	EM	dihydrodipicolinate synthase
184035	1.68221625189607	4.07080982712026	1.18433170428488	-	-	-	hypothetical protein
184036	1.4467177612068	3.11693193116353	1.09138085092403	312	Predicted Zn-dependent proteases and their inactivated homologs	R	tldD, putative modulator of DNA gyrase
184037	1.44478757929339	3.18064248346708	1.10067458027462	312	Predicted Zn-dependent proteases and their inactivated homologs	R	pmbA, putative modulator of DNA gyrase
184038	1.37145289668896	3.15860041819547	0.989559717189771	-	-	-	paREP10
184039	1.49578813754227	3.34014920380492	1.13240824047153	-	-	-	conserved within P. aerophilum
184040	1.80514850811089	3.91345083625614	1.08858814131004	-	-	-	hypothetical protein
184041	1.4519067414273	3.65296207950467	1.1956527405798	477	Permeases of the major facilitator superfamily	GEPR	resistance protein, conjectural
184042	1.30335000427395	2.7740031874817	0.970982807241506	852	NADH:ubiquinone oxidoreductase 27 kD subunit	C	NADH-ubiquinone oxidoreductase subunit
184043	1.41358002598156	3.10065968431254	1.0461958281692	377	NADH:ubiquinone oxidoreductase 20 kD subunit and related Fe-S oxidoreductases	C	NADH-ubiquinone oxidoreductase subunit
184044	1.42226711028942	3.11966791988799	1.05429165834105	656	Aldo/keto reductases, related to diketogulonate reductase	R	aldo-keto reductase, putative
184045	1.64429853371491	3.55023359319066	1.0730074302974	1064	Zn-dependent alcohol dehydrogenases	R	alcohol dehydrogenase (Zinc)
184046	1.53857148756885	3.33987903504238	1.07063118931959	3255	Putative sterol carrier protein	I	conserved hypothetical protein
184047	1.35498132117184	3.11653697621798	1.08119406920477	-	-	-	hypothetical protein
184048	1.3917994663482	2.96167857086913	1.04419606966814	1818	Predicted RNA-binding protein, contains THUMP domain	R	conserved hypothetical protein
184049	1.3696526284309	3.12299906566634	1.08924801340477	596	Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily)	R	conserved hypothetical protein
184050	1.3801548693128	2.99063888462397	1.05092215132828	294	Dihydropteroate synthase and related enzymes	H	dihydropteroate synthase
184051	1.61977863878866	3.40606942306527	1.07217605960989	-	-	-	hypothetical protein
184052	1.41586319607569	3.01459598590191	1.06022278572682	621	2-methylthioadenine synthetase	J	conserved hypothetical protein
184053	1.34475265149048	2.83046325413576	0.996331870167025	143	Methionyl-tRNA synthetase	J	methionyl-tRNA synthetase alpha subunit
184054	1.44474049859506	3.35796623191853	1.14186905189881	-	-	-	conserved hypothetical protein
184055	1.37090882249117	2.94243538791971	1.01885356657818	20	Undecaprenyl pyrophosphate synthase	I	conserved hypothetical protein
184056	1.40143964305585	3.10443695511323	1.06646489745487	73	EMAP domain	R	methionyl-tRNA synthetase beta subunit
184057	1.55491200076554	3.30121540475139	1.06868632591343	-	-	-	hypothetical protein
184058	1.41344729802766	2.93735044398971	0.961668533379242	-	-	-	hypothetical protein
184059	1.45909806357735	3.29658066078473	1.15644105746976	-	-	-	hypothetical protein
184060	1.37581060730884	2.99699603482955	1.04047815271495	1011	Predicted hydrolase (HAD superfamily)	R	conserved hypothetical protein
184061	1.47546406729705	3.42766237920906	1.14669690158402	455	ATPases involved in chromosome partitioning	D	hypothetical protein
184062	1.44621534005056	3.35167055162156	1.12255090869328	-	-	-	hypothetical protein
184063	1.54056209845313	3.41166725591872	1.09336003111266	-	-	-	hypothetical protein
184064	1.42202120055179	3.0115536115603	1.05565921943839	-	-	-	hypothetical protein
184065	1.39750638632599	3.04486155607432	1.06674901073124	834	ABC-type amino acid transport/signal transduction systems, periplasmic component/domain	ET	bacterial extracellular solute-binding proteins, family 3
184066	1.31982241072017	3.08627904217332	1.04152091114698	1430	Uncharacterized conserved protein	S	conserved hypothetical protein
184067	1.34354374631147	3.41703225971386	1.17574115942831	-	-	-	hypothetical protein
184068	1.40171607651362	3.04120345069676	1.0587860506528	846	NAD-dependent protein deacetylases, SIR2 family	K	conserved hypothetical protein
184069	1.42881753651853	3.04000043804426	1.04701653254129	1547	Uncharacterized conserved protein	S	conserved hypothetical protein
184070	1.42922169430685	3.07318954058945	1.07810322833776	517	FOG: CBS domain	R	conserved protein with 2 CBS domains
184071	1.39303550111934	3.13232758430917	1.08141410919199	-	-	-	hypothetical protein
184072	1.4590170217429	3.41152245633995	1.14444071908023	-	-	-	hypothetical protein
184073	1.38862881163744	3.0733902217115	1.10943014992856	-	-	-	hypothetical protein
184074	1.37111125395202	2.91541261862158	1.01000363639779	-	-	-	hypothetical protein
184075	1.35046781165115	2.95831013224199	1.03017036613194	1208	Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translati	MJ	sugar-phosphate nucleotidyl transferase, putative
184076	1.399439885707	2.94849116612728	1.0473881893161	8	Glutamyl- and glutaminyl-tRNA synthetases	J	glutamyl-tRNA synthetase
184077	1.50670863968231	3.31776937906089	1.13805886918639	1817	Uncharacterized protein conserved in archaea	S	conserved hypothetical protein
184078	1.40412679005137	3.17985535258208	1.08563474658197	-	-	-	hypothetical protein
184079	1.37192954835377	2.99261838682478	1.026834479746	1936	Predicted nucleotide kinase (related to CMP and AMP kinases)	F	conserved hypothetical protein
184080	1.39456269623677	2.9551290127515	1.01654578161469	17	Aspartyl/asparaginyl-tRNA synthetases	J	asparaginyl-tRNA synthetase
184081	1.38528640119295	2.89604103228935	0.98339888069079	-	-	-	conserved hypothetical protein
184082	1.46158000423452	3.16671050560677	1.08799527148429	2084	3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases	I	3-hydroxyisobutyrate dehydrogenase, putative
184083	1.50039091790739	3.2868821880414	1.12110246760351	9	Putative translation factor (SUA5)	J	sua5 family protein
184084	1.34379902797823	2.91976857353065	1.00250557283669	500	SAM-dependent methyltransferases	QR	methyltransferase
184085	1.46706730306686	3.23299285221622	1.07801137866913	462	Phosphoribosylpyrophosphate synthetase	FE	ribose-phosphate pyrophosphokinase
184086	1.42956836577083	3.00598374119758	1.04880986206688	123	Deacetylases, including yeast histone deacetylase and acetoin utilization protein	BQ	acetylpolyamine aminohydrolase, putative
184087	1.30549614677626	2.71995704779554	0.995202199798876	-	-	-	hypothetical protein
184088	1.55153493172364	3.38669588373256	1.04221591736971	1402	Uncharacterized protein, putative amidase	R	conserved hypothetical protein
184089	1.52268167851524	3.31542414132608	1.09381356156533	2429	Uncharacterized conserved protein	S	conserved hypothetical protein
184090	1.42348400288726	3.12042620042481	1.06115013085188	1985	Pyrimidine reductase, riboflavin biosynthesis	H	riboflavin specific deaminase, putative
184091	1.459405661382	3.14744556920072	1.07735329412629	108	3,4-dihydroxy-2-butanone 4-phosphate synthase	H	GTP cyclohydrolase II
184092	1.3695548175257	2.79932771953562	0.927765005566936	727	Predicted Fe-S-cluster oxidoreductase	R	conserved hypothetical protein
184093	1.51990978463286	3.31179245052614	1.11811281848132	644	Dehydrogenases (flavoproteins)	C	conserved hypothetical protein
184094	1.42248744030177	3.10946749077395	1.07087890503287	1488	Nicotinic acid phosphoribosyltransferase	H	conserved hypothetical protein
184095	1.46181332650057	3.1534366344624	1.09820073532309	1199	Rad3-related DNA helicases	KL	conserved hypothetical protein
184096	1.49616315099037	3.48338467722807	1.09647111801552	-	-	-	hypothetical protein
184097	1.43705375191474	3.15448832652254	1.10239097532874	550	Topoisomerase IA	L	DNA topoisomerase (topA)
184098	1.44498352950449	3.11157183761987	1.05842109997771	1736	Diphthamide synthase subunit DPH2	J	conserved hypothetical protein
184099	1.39488276801554	2.91043352461112	1.01988425607489	-	-	-	hypothetical protein
184100	1.43837846397828	3.14506840594757	1.09721676821808	433	Predicted ATPase	R	conserved hypothetical protein
184101	1.38726069428514	2.96116215786786	1.02918040347567	5256	Translation elongation factor EF-1alpha (GTPase)	J	translation elongation factor aEF-1 alpha subunit
184102	1.32858719794915	2.85954268136332	0.997340454817211	1335	Amidases related to nicotinamidase	Q	isochorismatase, putative
184103	1.66115714463921	3.53583450473607	1.12710209262579	-	-	-	paREP2a
184104	1.36281140068045	2.89543700318842	0.981209358149739	251	Putative translation initiation inhibitor, yjgF family	J	conserved hypothetical protein
184105	1.48064347260099	3.20294509616755	1.06090885707006	-	-	-	hypothetical protein
184106	1.36045529654383	3.04362208114664	1.07798612100484	-	-	-	hypothetical protein
184107	1.67059531399665	3.77532873944051	1.11170275286174	-	-	-	paREP2a
184108	1.5279570613267	3.21697804882078	1.03690131765871	-	-	-	paREP2a
184109	1.42624525521911	3.00635982758789	1.02962576778331	-	-	-	paREP2b
184110	1.52038609759094	3.36031963307355	1.11125066823223	-	-	-	conserved within P. aerophilum
184111	1.39211940567901	3.01732350293324	1.04025150592327	1720	Uncharacterized conserved protein	S	conserved hypothetical protein
184112	1.42849980106515	3.15580851078251	1.05960865302613	-	-	-	hypothetical protein
184113	1.48976308215775	3.30376838972294	1.06013367169771	-	-	-	conserved within P. aerophilum
184114	1.55903798735889	3.73842528726804	1.20217635286618	-	-	-	hypothetical protein
184115	1.43828083957075	3.4546049515651	1.12376159425433	-	-	-	hypothetical protein
184116	1.47880489997077	3.35478742301562	1.06800625565759	-	-	-	hypothetical protein
184117	1.36810756599314	2.96339183699674	1.08707197903975	-	-	-	hypothetical protein
184118	1.40651491244474	3.14818624424708	1.08296150586166	388	Predicted amidohydrolase	R	carbon nitrogen hydrolase, conjectural
184119	1.36538132295143	2.95440362642759	1.02411358565425	1208	Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translati	MJ	sugar-phosphate nucleotidyl transferase
184120	1.36908143534443	2.96034777841409	1.05541056325066	449	Glucosamine 6-phosphate synthetase, contains amidotransferase and phosphosugar isomerase domains	M	glucosamine--fructose-6-phosphate aminotransferase (isomerizing)
184121	1.3717306282767	2.99926275461821	1.05444522616096	618	Exopolyphosphatase-related proteins	R	conserved hypothetical protein
184122	1.34756141235114	2.98622653883492	1.04805008266337	-	-	-	hypothetical protein
184123	1.40701945879834	3.33595574324712	1.16947002824053	1287	Uncharacterized membrane protein, required for N-linked glycosylation	R	oligosaccharyl transferase STT3 homolog
184124	1.43251878902577	3.24867519357301	1.0952040887102	2260	Predicted Zn-ribbon RNA-binding protein	J	conserved hypothetical protein
184125	1.44528137011618	3.07369215888696	1.02825371126876	1093	Translation initiation factor 2, alpha subunit (eIF-2alpha)	J	translation initiation factor aIF-2 alpha subunit
184126	1.40982067246941	3.13055191417112	1.07890835854788	2051	Ribosomal protein S27E	J	ribosomal protein S27
184127	1.54603263743614	3.28647350608013	1.03715402082411	1631	Ribosomal protein L44E	J	ribosomal protein L44
184128	1.34283108859697	3.03131116788824	1.02144096753222	-	-	-	hypothetical protein
184129	1.41838334516599	2.94486287400874	1.00770137483538	1467	Eukaryotic-type DNA primase, catalytic (small) subunit	L	DNA primase related protein
184130	1.3057680927119	2.86895002965938	0.998689820832327	592	DNA polymerase sliding clamp subunit (PCNA homolog)	L	proliferating-cell nuclear antigen homolog (PCNA)
184131	1.54416165730038	3.20382592886479	1.03253129453306	1594	DNA-directed RNA polymerase, subunit M/Transcription elongation factor TFIIS	K	DNA-directed RNA polymerase subunit M
184132	1.38223253335246	3.05972426052938	1.04975972691098	2238	Ribosomal protein S19E (S16A)	J	ribosomal protein S19
184133	1.41996688903506	3.12006377281341	1.07061432306949	2118	DNA-binding protein	R	conserved hypothetical protein
184134	1.38702274529315	3.26463009212616	1.22882157400725	-	-	-	ribosomal protein L39E, frameshift
184135	1.44545422213245	3.21616897024971	1.07009852230001	1646	Predicted phosphate-binding enzymes, TIM-barrel fold	R	pcrB homolog
184136	1.41326775261314	2.8815415663567	0.990055596363354	4888	Uncharacterized Zn ribbon-containing protein	R	conserved hypothetical protein
184137	1.43525086400023	3.08768846691749	1.07644642605894	303	Molybdopterin biosynthesis enzyme	H	molybdenum cofactor biosynthesis protein (moaA)
184138	1.40374123646076	2.97684112528981	1.02382616157006	2236	Predicted phosphoribosyltransferases	R	phosphoribosyl transferase
184139	1.44384489723249	3.28250221147186	1.12561356365597	-	-	-	hypothetical protein
184140	1.49706457704315	3.25898882285774	1.1037526241042	-	-	-	hypothetical protein
184141	1.45959917594882	3.23177519972354	1.13088834839683	483	Archaeal fructose-1,6-bisphosphatase and related enzymes of inositol monophosphatase family	G	extragenic suppressor protein suhB homolog
184142	1.46560189770289	3.1382338471595	1.07129555452191	467	RecA-superfamily ATPases implicated in signal transduction	T	P. aerophilum family 417, putative ATP binding
184143	1.78963209715372	3.69143036767008	1.13602274790237	3269	Predicted RNA-binding protein, contains TRAM domain	R	conserved hypothetical protein
184144	1.60542610951947	3.54506419990606	1.09230474648401	-	-	-	hypothetical protein
184145	1.53351083272635	3.69866783240262	1.05370798055025	-	-	-	hypothetical protein
184146	1.50877097920274	3.6239812241509	1.21014705283339	471	Di- and tricarboxylate transporters	P	conserved hypothetical protein
184147	1.51162486501172	3.6460413074022	1.21694220657867	-	-	-	ABC-2 type transport system, membrane protein
184148	1.36244881791452	3.47628397100578	1.16471909905936	842	ABC-type multidrug transport system, permease component	V	ABC-2 type transport system, membrane protein
184149	1.46947329612166	3.24074361901256	1.04742559911411	1131	ABC-type multidrug transport system, ATPase component	V	ABC-2 type transport system ATP-binding protein
184150	1.4890343629157	3.31142300812323	1.11626415256916	637	Predicted phosphatase/phosphohexomutase	R	phosphoglycolate phosphatase (pgp), conjectural
184151	1.56451164924	3.2200675952752	1.03488750805871	-	-	-	paREP2b
184152	1.27819416520825	3.15930905651396	1.16004956668763	-	-	-	paREP2b
184153	1.37476580877294	3.03825573942666	1.07576644522358	-	-	-	P. aerophilum family 1964 protein
184154	1.57900162811054	3.68996823717582	1.08317765742703	-	-	-	hypothetical protein
184155	1.37656401943096	2.95274175742446	1.00608194036007	1801	Uncharacterized conserved protein	S	conserved hypothetical protein
184156	1.34679069091678	2.88376756019476	0.956287617525478	-	-	-	conserved hypothetical protein
184157	1.24992295767547	2.54183959062222	0.979528854882485	-	-	-	hypothetical protein
184158	1.43917173211997	3.05751505343566	1.08314077069149	1446	Asparaginase	E	asparaginase
184159	1.29077405429226	2.94983434409418	1.01115446463595	522	Ribosomal protein S4 and related proteins	J	ribosomal protein S4
184160	1.41556775682817	3.12963398335958	1.06512651797767	99	Ribosomal protein S13	J	ribosomal protein S13
184161	1.59234992078108	3.62688065081372	1.08905540919662	1173	ABC-type dipeptide/oligopeptide/nickel transport systems, permease components	EP	oligopeptide ABC transporter, permease protein
184162	1.57940342156173	3.82402333809785	1.17295216938652	601	ABC-type dipeptide/oligopeptide/nickel transport systems, permease components	EP	oligopeptide ABC transporter, permease protein
184163	1.62335607493552	3.48695655886722	1.08101425327795	3889	Predicted solute binding protein	R	oligopeptide binding protein, putative
184164	1.5161584831791	3.47587749295299	1.16170883039705	4945	Membrane-anchored protein predicted to be involved in regulation of amylopullulanase	G	pullulanase
184165	1.32815673174536	2.82953775472945	0.966624414698714	180	Tryptophanyl-tRNA synthetase	J	tryptophanyl-tRNA synthetase
184166	1.36199966129219	3.04744963224316	1.06728184999425	177	Predicted EndoIII-related endonuclease	L	DNA-(apurinic or apyrimidinic site) lyase, conjectural
184167	1.36835660814137	3.03576130901961	1.0375060524768	5014	Predicted Fe-S oxidoreductase	R	molybdenum cofactor biosynthesis protein (moaA)
184168	1.45250813463139	3.18643920319634	1.09983930631555	2097	Ribosomal protein L31E	J	ribosomal protein L31
184169	1.32330423117936	3.02609309045033	1.08165710451883	1976	Translation initiation factor 6 (eIF-6)	J	translation initiation factor aIF-6
184170	1.32722599347226	2.91982200905028	1.04837333688101	2157	Ribosomal protein L20A (L18A)	J	ribosomal protein LX
184171	1.35744415763642	3.05775824382598	1.06939705612595	1730	Predicted prefoldin, molecular chaperone implicated in de novo protein folding	O	conserved hypothetical protein
184172	1.4334572141043	3.07099528460679	1.05874444566357	552	Signal recognition particle GTPase	U	signal recognition particle protein (docking protein), probable
184173	1.44476275951225	3.44552900002397	1.13752386102785	-	-	-	hypothetical protein
184174	1.46102391216015	3.17298716235042	1.06297003897292	250	Transcription antiterminator	K	transcription antitermination protein nusG, putative
184175	1.36269514787028	2.96568780428302	1.04227393786468	80	Ribosomal protein L11	J	ribosomal protein L11
184176	1.36865276465327	2.992129809192	1.03790444065948	81	Ribosomal protein L1	J	ribosomal protein L1
184177	1.34425770648365	2.96650815513959	1.04143550065365	244	Ribosomal protein L10	J	acidic ribosomal protein P0 (L10E)
184178	1.43310737290207	3.15323737702015	1.05696072428266	1577	Mevalonate kinase	I	mevalonate kinase
184179	1.47022578111236	3.76348336990359	1.22439968052471	-	-	-	hypothetical protein
184180	1.43881075460682	3.11636255659573	1.05356406135276	2820	Uridine phosphorylase	F	uridine phosphorylase
184181	1.39904800702965	3.0998688765418	1.07924860287867	-	-	-	hypothetical protein
184182	1.42761368176866	3.14361412515709	1.05736212851808	4080	RecB-family nuclease	L	conserved hypothetical protein
184183	1.42768882708915	3.12551960704852	1.09065892515413	1712	Predicted dinucleotide-utilizing enzyme	R	nicotinate-nucleotide pyrophosphorylase AND conserved protein
184184	1.35956343042518	2.92061186355941	1.04273350080025	379	Quinolinate synthase	H	quinolinate synthetase A
184185	1.50354863628303	3.4155546028411	1.15432913067356	61	Predicted sugar kinase	G	conserved hypothetical protein
184186	1.40358826438352	2.94625635413352	1.00376122193292	71	Molecular chaperone (small heat shock protein)	O	small heat shock protein, hsp20 homolog, conjectural
184187	1.54670640156793	3.5942985791788	1.14976084833108	1079	Uncharacterized ABC-type transport system, permease component	R	ribose ABC transporter, permease protein
184188	1.39126325639118	3.36172645932884	1.17401356170521	4603	ABC-type uncharacterized transport system, permease component	R	ribose ABC transporter, permease protein
184189	1.4576339866769	3.16557973265735	1.11098506725713	3845	ABC-type uncharacterized transport systems, ATPase components	R	ribose ABC transport system ATP-binding
184190	1.36385339618412	2.95572694186761	1.04431568520897	1744	Uncharacterized ABC-type transport system, periplasmic component/surface lipoprotein	R	sugar binding protein
184191	1.52038312755054	3.53896803723767	1.11516768527934	-	-	-	hypothetical protein
184192	1.5034007319683	3.25000489249587	1.11753561607826	2366	Protein related to penicillin acylase	R	penicillin amidase
184193	1.60998226383748	3.8419004199889	1.14575469290318	-	-	-	P. aerophilum family 70 protein
184194	1.59451271278026	3.60116633533786	1.13412561285265	-	-	-	P. aerophilum family 68 protein, part 2, authentic frameshift
184195	1.58664500298751	3.56730886184233	1.12634594743116	-	-	-	P. aerophilum family 68 protein, part 1, authentic frameshift
184196	1.49845239307907	3.16851825800307	1.0292089343243	-	-	-	hypothetical protein
184197	1.40441111554397	3.09415237403928	1.05413723914997	3357	Predicted transcriptional regulator containing an HTH domain fused to a Zn-ribbon	K	conserved hypothetical protein
184198	1.42888996256403	3.13536121790191	1.09444405078374	585	Uncharacterized conserved protein	S	conserved hypothetical protein
184199	1.39255822465994	3.07845549578968	1.04161031822819	2006	Uncharacterized conserved protein	S	hypothetical protein
184200	1.43192347488591	3.0374241687253	1.06330147333538	93	Ribosomal protein L14	J	ribosomal protein L14
184201	1.37552988129221	3.02761216236002	1.05744833258802	-	-	-	hypothetical protein
184202	1.45869164183838	3.22131764733285	1.08705019554075	-	-	-	hypothetical protein
184203	1.47648953816944	3.20626085143319	1.10418309828746	499	S-adenosylhomocysteine hydrolase	H	adenosylhomocysteinase
184204	1.41647480785069	3.15091127233709	1.05497482957958	-	-	-	hypothetical protein
184205	1.48038506589419	3.13829082988153	1.04446485848232	467	RecA-superfamily ATPases implicated in signal transduction	T	conserved hypothetical protein
184206	1.43974624173913	3.19353823724565	1.04637148505566	1318	Predicted transcriptional regulators	K	conserved hypothetical protein
184207	1.41652633203644	3.0886854529228	1.04318961335379	3382	Uncharacterized conserved protein	S	conserved hypothetical protein
184208	1.43217669411667	3.07600111760333	1.06170015217417	2403	Predicted GTPase	R	conserved hypothetical protein
184209	1.38863267854509	2.98783065953991	1.04664620924379	-	-	-	hypothetical protein
184210	1.5593668296377	3.41929577186961	1.10859139883853	-	-	-	hypothetical protein
184211	1.31157243291863	2.84156528067943	1.01520271078882	1651	Protein-disulfide isomerase	O	thiol:disulphide interchange protein, putative
184212	1.3306264579893	2.89460930165858	1.00738298025792	5494	Predicted thioredoxin/glutaredoxin	O	conserved hypothetical protein
184213	1.31236876028264	2.83428863175285	1.01354087518337	209	Ribonucleotide reductase, alpha subunit	F	ribonucleotide reductase
184214	1.46830189794702	3.688065831825	1.24123519756161	-	-	-	hypothetical protein
184215	1.68262542381102	3.64186971880034	1.09508469464773	-	-	-	hypothetical protein
184216	1.42069710028839	3.03839999440757	1.04037054154793	172	Seryl-tRNA synthetase	J	seryl-tRNA synthetase
184217	1.50443865506551	3.33662002803838	1.11242355658524	528	Uridylate kinase	F	uridylate kinase (pyrH)
184218	1.5052607521618	3.14411659133659	1.0561638918363	-	-	-	hypothetical protein
184219	1.50482292849573	3.1036194885638	1.02776889796005	537	Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases	FGR	HIT family protein
184220	1.49963059589528	3.39470227349005	1.14964488559658	2771	DNA-binding HTH domain-containing proteins	K	regulatory protein, luxR family, conjectural
184221	1.40208497712229	3.02571837688913	1.0510088055861	12	Predicted GTPase, probable translation factor	J	GTP binding protein, putative
184222	1.45559981565641	2.92192797526672	1.07050173454761	-	-	-	paREP2a
184223	1.46706071869288	3.43778000858716	1.15774447686971	-	-	-	hypothetical protein
184224	1.3917451614843	3.0525553003234	1.09532499114002	517	FOG: CBS domain	R	conserved protein with 7 CBS domains
184225	1.38277974863329	2.93720662571586	1.04347238137075	464	ATPases of the AAA+ class	O	AAA family ATPase, possible cell division control protein cdc48
184226	1.23085837774195	2.43941556972708	0.863298016092275	71	Molecular chaperone (small heat shock protein)	O	small heat shock protein, hsp20 homolog, conjectural
184227	1.43651685054309	2.98745075990241	1.01114720379468	4345	Uncharacterized protein conserved in archaea	S	conserved hypothetical protein
184228	1.38589820242868	2.93504526116315	1.01662771364898	1818	Predicted RNA-binding protein, contains THUMP domain	R	conserved hypothetical protein
184229	1.50735384030671	3.48596263234952	1.14566636115666	-	-	-	conserved within P. aerophilum part 1, authentic frameshift
184230	1.38104922650805	3.05656080339401	1.05745680893497	-	-	-	conserved within P. aerophilum part 2, authentic frameshift
184231	1.4886581569771	3.30120474634623	1.10542183991671	100	Ribosomal protein S11	J	ribosomal protein S11
184232	1.2898768873146	2.7390497103628	0.940239308636397	-	-	-	hypothetical protein
184233	1.50675921088114	3.26668130877186	1.12084556472812	-	-	-	hypothetical protein
184234	1.51989731262786	3.65052003937886	1.1682989790088	-	-	-	hypothetical protein
184235	1.29304890607918	2.67972787007082	0.923511363168068	1180	Pyruvate-formate lyase-activating enzyme	O	pyruvate formate-lyase activating enzyme homolog
184236	1.44954263514238	3.36320532073905	1.0714188092237	-	-	-	paREP9, associated with SRSRs
184237	1.30506592087859	2.87673012789579	0.960412306527537	1392	Phosphate transport regulator (distant homolog of PhoU)	P	conserved hypothetical protein
184238	1.28943628404273	3.30693351652987	1.11229912895855	-	-	-	hypothetical protein
184239	1.29199070144226	2.70667741906886	0.953497765966107	2220	Predicted Zn-dependent hydrolases of the beta-lactamase fold	R	conserved hypothetical protein
184240	1.22555554847221	2.57482783849026	0.967199892344014	-	-	-	paREP4
184241	1.302982984788	3.13668693230835	1.18319021348549	-	-	-	hypothetical protein
184242	1.58184490087848	3.54959740307203	1.12613223570758	-	-	-	possible heat shock protein, htpX homolog part 1, authentic frameshift
184243	1.26837531545421	2.92597701935281	0.962385010807614	501	Zn-dependent protease with chaperone function	O	possible heat shock protein, htpX homolog part 2, authentic frameshift
184244	1.40681126466592	3.13018653378249	1.03510429070921	1502	Phosphatidylserine/phosphatidylglycerophosphate/cardiolipin synthases and related enzymes	I	hypothetical protein
184245	1.57926160322797	3.57986586842772	1.15660542725282	-	-	-	hypothetical protein
184246	1.59192785365086	3.55091485874344	1.13489179533042	1205	Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster	R	ATP-dependant helicase, probable
184247	1.5692847018004	3.46029532383441	1.10038478930797	1194	A/G-specific DNA glycosylase	L	U/G & T/G mismatch specific glycosylase (Pa-MIG)
184248	1.66667215782659	3.66289956360786	1.08378825015615	-	-	-	conserved protein
184249	1.48534346526646	3.21584828940452	1.09015991047564	270	Site-specific DNA methylase	L	C-5 cytosine-specific DNA methylase
184250	1.33975505627003	2.9198967165321	0.967781006217558	-	-	-	hypothetical protein
184251	1.45245228244772	3.1440787186859	1.07708661696112	675	Transposase and inactivated derivatives	L	hypothetical protein
184252	1.31474035110818	3.01047724704631	1.00183988595787	433	Predicted ATPase	R	hypothetical protein
184253	1.33136664902525	3.12129004756901	1.01629186035441	-	-	-	hypothetical protein
184254	1.44373331592171	3.06427455512352	1.02800447345647	-	-	-	paREP8
184255	1.3155320377111	2.90841472502909	1.02292059328283	-	-	-	paREP8
184256	1.44902339606529	3.18252204996392	1.10404716893875	1396	Predicted transcriptional regulators	K	helix-turn-helix protein
184257	1.40184373952263	3.54372764433257	1.18757768252437	697	Permeases of the drug/metabolite transporter (DMT) superfamily	GER	conserved hypothetical protein
184258	1.28900329354105	2.53184991938877	1.10989617783574	-	-	-	hypothetical protein
184259	1.42716441952075	3.12331083663397	1.06894628734342	1408	Predicted phosphohydrolases	R	conserved hypothetical protein
184260	1.57944913530779	3.54367282360707	1.10112013705843	2430	Uncharacterized conserved protein	S	conserved hypothetical protein
184261	1.57503913445284	3.587652505862	1.15150949646832	668	Small-conductance mechanosensitive channel	M	conserved hypothetical protein
184262	1.42278115657512	3.11156647071558	1.07141674598941	116	Predicted N6-adenine-specific DNA methylase	L	conserved hypothetical protein
184263	1.39096971747262	3.08734423436487	1.09661051238096	1855	ATPase (PilT family)	R	conserved hypothetical protein
184264	1.42292549441187	3.19738193997077	1.08586698185061	500	SAM-dependent methyltransferases	QR	conserved hypothetical protein
184265	1.42956370942305	3.21526184999705	1.10320799465719	1234	Metal-dependent hydrolases of the beta-lactamase superfamily III	R	conserved hypothetical protein
184266	1.55706787696247	3.29021772808824	1.08905570315734	-	-	-	paREP2b
184267	1.81802343056162	4.00724542408727	1.20291662611276	-	-	-	paREP2b
184268	1.40877476418381	3.19165676453345	1.0823121593481	30	Dimethyladenosine transferase (rRNA methylation)	J	dimethyladenosine transferase
184269	1.36970718894806	2.97629981088676	1.06363058837509	2511	Archaeal Glu-tRNAGln amidotransferase subunit E (contains GAD domain)	J	Glu-tRNA(Gln) amidotransferase subunit B (gatB)
184270	1.55010922009581	3.38456992891655	1.14540546402303	2174	Ribosomal protein L34E	J	ribosomal protein L34
184271	1.53146280689036	3.45582517487773	1.1313151966854	1102	Cytidylate kinase	F	cytidylate kinase (cmk)
184272	1.38918975377783	3.00149906329246	1.05771354489852	493	NADPH-dependent glutamate synthase beta chain and related oxidoreductases	ER	glutamate synthase small subunit gltD
184273	1.42237205832098	2.9684459919352	1.01334511961318	1889	Fibrillarin-like rRNA methylase	J	fibrillarin-like pre-rRNA processing protein (flpA)
184274	1.40047457929419	3.10628318057165	1.08115865439974	1498	Protein implicated in ribosomal biogenesis, Nop56p homolog	J	nop family pre-rRNA processing protein
184275	1.52051290038274	3.47573012238366	1.11559950613216	-	-	-	paREP1
184276	1.43141825568146	3.11362809438559	1.09667711575794	1680	Beta-lactamase class C and other penicillin binding proteins	V	beta-lactamase-like protein
184277	1.39705926018712	2.97065100241451	1.04157484891108	468	RecA/RadA recombinase	L	DNA repair protein radA
184278	1.53956438526923	3.47166130091316	1.13019690240763	-	-	-	hypothetical protein
184279	1.49463598988414	3.19350174268038	1.07056362916977	-	-	-	hypothetical protein
184280	1.38831899406401	3.21601901473527	1.06438780412567	3432	Predicted transcriptional regulator	K	conserved hypothetical protein
184281	1.41857016537687	3.26420368700692	1.10122423678955	-	-	-	hypothetical protein
184282	1.35604035673836	3.03147852318252	1.05247290950667	1192	ATPases involved in chromosome partitioning	D	chromosome partitioning ATPase, parA family protein, conjectural
184283	1.48473483253284	3.15986147360913	1.05121247365603	-	-	-	conserved within P. aerophilum
184284	1.40463163032972	2.99542726354162	1.02518435596996	1247	Sortase and related acyltransferases	M	conserved hypothetical protein
184285	1.41718083428972	2.99207582573405	1.03918024904586	656	Aldo/keto reductases, related to diketogulonate reductase	R	morphine 6-dehydrogenase, conjectural
184286	1.44833570937639	3.01972591643768	1.07714930441703	1042	Acyl-CoA synthetase (NDP forming)	C	conserved hypothetical protein
184287	1.46222782606207	3.18435908138209	1.10554436589121	1042	Acyl-CoA synthetase (NDP forming)	C	conserved hypothetical protein
184288	1.46495311776437	3.25217854903441	1.09447785459047	-	-	-	hypothetical protein
184289	1.43884331759068	3.20589877310792	1.09094422359013	668	Small-conductance mechanosensitive channel	M	conserved hypothetical protein
184290	1.45927567844033	3.17742448778399	1.0556032449185	370	Fe2+ transport system protein B	P	conserved within P. aerophilum
184291	1.51381394714281	3.43630058234449	1.1659767079826	-	-	-	conserved within P. aerophilum
184292	1.61120791120736	3.3454146287565	1.08722486964439	1552	Ribosomal protein L40E	J	ribosomal protein L40
184293	1.44228406542431	3.03695082813475	1.04988390990714	648	Endonuclease IV	L	DNA-(apurinic or apyrimidinic site) lyase (endonuclease IV)
184294	1.44416415537574	3.13601907761952	1.0952777924805	1293	Predicted RNA-binding protein homologous to eukaryotic snRNP	K	conserved hypothetical protein
184295	1.44652028657889	3.87433252390624	1.27323710064632	-	-	-	P. aerophilum family 550 protein
184296	1.53265075751283	3.42692450690165	1.13612604196727	-	-	-	P. aerophilum family 66 protein
184297	1.46470557514055	3.16068780680698	1.02658528787328	1656	Uncharacterized conserved protein	S	conserved hypothetical protein
184298	1.56769514823188	3.65136195114307	1.16714349329771	167	Dihydroorotate dehydrogenase	F	dihydroorotate dehydrogenase (pyrD)
184299	1.43183390543147	3.10039366775874	1.07120981875581	461	Orotate phosphoribosyltransferase	F	orotate phosphoribosyltransferase (pyrE)
184300	1.45442671989189	3.16305151736559	1.04455901350008	1781	Aspartate carbamoyltransferase, regulatory subunit	F	aspartate carbamoyltransferase, regulatory subunit (pyrI)
184301	1.3834071691348	3.0533692310493	1.06150782442547	683	ABC-type branched-chain amino acid transport systems, periplasmic component	E	branched-chain amino acid binding protein, putative
184302	1.40858115977233	3.16651008425852	1.0918917678747	410	ABC-type branched-chain amino acid transport systems, ATPase component	E	branched-chain amino acid ABC transporter, ATP-binding protein, putative
184303	1.38389548031542	3.10658620963377	1.03756517116646	1758	DNA-directed RNA polymerase, subunit K/omega	K	DNA-directed RNA polymerase subunit
184304	1.39906517615647	3.0170829197357	1.05541113224648	459	Chaperonin GroEL (HSP60 family)	O	thermosome (chaperonin) beta subunit
184305	1.478679347937	3.29059215468669	1.07222786967312	1013	Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, beta subunit	C	2-ketoacid ferredoxin oxidoreductase beta subunit
184306	1.47530565840978	3.17792590175911	1.09439078012861	674	Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, alpha subunit	C	2-ketoacid ferredoxin oxidoreductase alpha subunit
184307	1.37190894213837	2.95496908209126	1.04724391929606	1144	Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, delta subunit	C	2-ketoacid ferredoxin oxidoreductase delta subunit
184308	1.50735715181798	3.31218803774668	1.12217010365743	1014	Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, gamma subunit	C	2-ketoacid ferredoxin oxidoreductase gamma subunit
184309	1.43654390892237	3.1843579862331	1.08501907209539	677	UDP-N-acetyl-D-mannosaminuronate dehydrogenase	M	UDP-N-acetyl-D-mannosaminuronic acid dehydrogenase, conjectural
184310	1.54948790741507	3.3721896227562	1.12184620980177	1234	Metal-dependent hydrolases of the beta-lactamase superfamily III	R	conserved hypothetical protein
184311	1.48088923537738	3.11251531601421	1.04951836573265	1909	Uncharacterized protein conserved in archaea	S	conserved hypothetical protein
184312	1.4500674129878	3.33037636150863	1.0663381245166	1651	Protein-disulfide isomerase	O	hypothetical protein
184313	1.43601054233843	3.18395644341719	1.07390546632652	-	-	-	hypothetical protein
184314	1.63000190930537	3.4002396740259	1.08845415061763	1537	Predicted RNA-binding proteins	R	cell division protein pelota (pelA), conjectural
184315	1.23659141681614	2.598013618253	0.963732098864091	-	-	-	paREP4
184316	1.60275899775116	3.49145751498909	1.10349498167801	-	-	-	conserved within P. aerophilum
184317	1.61073667517861	3.53703931925125	1.12675617396647	1618	Predicted nucleotide kinase	F	conserved hypothetical protein
184318	1.71558368765383	4.02931301485922	1.18726405815872	142	Geranylgeranyl pyrophosphate synthase	H	polyprenyl synthetase
184319	1.68072184562204	3.49830676013537	1.05761542154473	-	-	-	hypothetical protein
184320	1.47702454769384	3.12144408229256	1.0592140681441	54	Riboflavin synthase beta-chain	H	riboflavin synthase
184321	1.55968039007432	3.34516754821757	1.09862836053396	115	Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase	EH	branched-chain amino acid aminotransferase (ilvE)
184322	1.51115364343703	3.20555176245987	1.09177138430221	59	Ketol-acid reductoisomerase	EH	acetohydroxy acid isomeroreductase (ilvC)
184323	1.42297297757347	3.11741436343226	1.08151753505445	-	-	-	acetolactate synthase small subunit
184324	1.54616758815181	3.38723813793027	1.12963979884077	28	Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome)	EH	acetolactate synthase large subunit (ilvB)
184325	1.56409976296112	3.2198453601452	1.006946564326	494	NTP pyrophosphohydrolases including oxidative damage repair enzymes	LR	mutT/nudix family protein
184326	1.57644302291439	3.21860913527538	0.960270163677028	-	-	-	hypothetical protein
184327	1.53925603192858	3.29489722469843	1.02882926720486	-	-	-	hypothetical protein
184328	1.48928274383806	3.31168875021135	1.11344042726062	1236	Predicted exonuclease of the beta-lactamase fold involved in RNA processing	J	mRNA 3'-end processing factor, conjectural
184329	1.58294611464921	3.58073996451736	1.11550945586869	198	Ribosomal protein L24	J	ribosomal protein L24
184330	1.59493368279826	3.53613604005577	1.11693186348155	1471	Ribosomal protein S4E	J	ribosomal protein S4
184331	1.43813518048235	3.04991657854567	1.02358993124369	-	-	-	hypothetical protein
184332	1.53826299713716	3.38908235465101	1.09534391512839	4608	ABC-type oligopeptide transport system, ATPase component	E	oligopeptide transport ATP-binding protein, putative
184333	1.46913208128767	3.31185631709825	1.10518351765032	444	ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component	EP	oligopeptide transport ATP-binding protein, putative
184334	1.58661485604943	3.47428313393984	1.11513709797577	524	Sugar kinases, ribokinase family	G	kinase, conjectural
184335	1.62263195644755	3.70250265466774	1.19297671969247	2524	Predicted transcriptional regulator, contains C-terminal CBS domains	K	conserved protein with 2 CBS domains
184336	1.50429356461306	3.315028930621	1.08616872274467	111	Phosphoglycerate dehydrogenase and related dehydrogenases	HE	D-3-phosphoglycerate dehydrogenase (serA)
184337	1.47366869962056	3.30427983471457	1.09885031153275	75	Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase	E	aminotransferase (class 5)
184338	1.51691196996273	3.4359519047968	1.108819875791	1578	Uncharacterized conserved protein	S	conserved hypothetical protein
184339	1.45133337412996	3.24270755102502	1.04037302112815	-	-	-	conserved hypothetical protein
184340	1.5538387090868	3.39225563486115	1.12779231175952	1746	tRNA nucleotidyltransferase (CCA-adding enzyme)	J	tRNA nucleotidyltransferase
184341	1.56887752613218	3.48372158963111	1.06397739187438	1514	2'-5' RNA ligase	J	conserved hypothetical protein
184342	1.52838467120885	3.35388246486696	1.07844751217414	1522	Transcriptional regulators	K	DNA binding transcriptional repressor, conjectural
184343	1.58898951105289	3.45574428830848	1.12151366009558	1405	Transcription initiation factor TFIIIB, Brf1 subunit/Transcription initiation factor TFIIB	K	transcription initiation factor IIB (TFIIB)
184344	1.45776334988047	3.10790038078895	1.06060852951031	3277	RNA-binding protein involved in rRNA processing	J	hypothetical protein
184345	1.46643334354371	3.14927695895084	1.05872754694138	2007	Ribosomal protein S8E	J	ribosomal protein S8
184346	1.63933441666585	3.51730137555358	1.06307855978891	1400	Signal recognition particle 19 kDa protein	U	signal recognition particle
184347	1.46132880676854	3.23470702716437	1.05146739202448	1100	GTPase SAR1 and related small G proteins	R	conserved hypothetical protein
184348	1.52455130235136	3.31553964997354	1.05944532570972	2139	Ribosomal protein L21E	J	ribosomal protein L21
184349	1.44207013179173	3.30755167357588	1.1072131032936	1460	Uncharacterized protein conserved in archaea	S	conserved hypothetical protein
184350	1.51741566521763	3.15839364258994	0.99691081782862	1491	Predicted RNA-binding protein	J	conserved hypothetical protein
184351	1.61952998684398	3.39465030296234	1.05043931076423	231	Translation elongation factor P (EF-P)/translation initiation factor 5A (eIF-5A)	J	translation initiation factor aIF-5A
184352	1.44833492176853	3.06556027544435	1.06715639592442	5	Purine nucleoside phosphorylase	F	purine nucleoside phosphorylase
184353	1.46276320274459	3.0627158078828	1.0402783534323	-	-	-	hypothetical protein
184354	1.39125046126652	2.88762626529704	1.02289925442117	23	Translation initiation factor 1 (eIF-1/SUI1) and related proteins	J	translation initiation factor SUI1 homolog
184355	1.46261923266217	3.28035111504082	1.07174997695639	-	-	-	hypothetical protein
184356	1.4881507871761	3.19519476308566	1.09983838614342	18	Arginyl-tRNA synthetase	J	arginyl-tRNA synthetase
184357	1.64381846144196	3.51695331226652	1.1364555282948	2053	Ribosomal protein S28E/S33	J	ribosomal protein S28
184358	1.24152819478614	2.63732911920555	1.01321382746378	2075	Ribosomal protein L24E	J	ribosomal protein L24
184359	1.55184225176022	3.32724231063941	1.07245033376543	1358	Ribosomal protein HS6-type (S12/L30/L7a)	J	ribosomal protein L7
184360	1.54436445891139	3.61910312294481	1.19300551536357	4177	ABC-type branched-chain amino acid transport system, permease component	E	branched-chain amino acid transport permease protein
184361	1.52630118477026	3.68545529837373	1.18282874738676	559	Branched-chain amino acid ABC-type transport system, permease components	E	branched-chain amino acid transport permease protein
184362	1.49455974675855	3.27828420951485	1.09997718210518	683	ABC-type branched-chain amino acid transport systems, periplasmic component	E	branched-chain amino acid binding protein
184363	1.49806225408758	3.17220074604201	1.04141687112771	411	ABC-type branched-chain amino acid transport systems, ATPase component	E	branched-chain amino acid transport ATP-binding protein
184364	1.52514992992624	3.55401136116351	1.18518813234556	1361	S-layer domain	M	conserved hypothetical protein
184365	1.45421950008673	3.44787069834046	1.19765714343855	477	Permeases of the major facilitator superfamily	GEPR	antibiotic resistance (efflux) protein, conjectural
184366	1.40545692423454	3.41868497617028	1.18338207269106	477	Permeases of the major facilitator superfamily	GEPR	conserved hypothetical protein
184367	1.60688835798183	3.4157585674613	1.01247158229839	500	SAM-dependent methyltransferases	QR	hypothetical protein
184368	1.37163807346077	2.9234444487627	1.005418215608	467	RecA-superfamily ATPases implicated in signal transduction	T	conserved hypothetical protein
184369	1.45606010070575	3.22829714310956	1.11867331167766	541	Signal recognition particle GTPase	U	signal recognition particle (srp54 family), putative
184370	1.45410150646958	3.20311969189749	1.08506255762517	-	-	-	hypothetical protein
184371	1.53106379088424	3.37864957291337	1.12945344536575	1258	Predicted pseudouridylate synthase	J	conserved hypothetical protein
184372	1.4414418077976	3.03726122317321	1.05404959873912	519	GMP synthase, PP-ATPase domain/subunit	F	GMP synthetase (glutamine-hydrolysing)
184373	1.44765896424105	3.19620877090883	1.12236552758171	405	Gamma-glutamyltransferase	E	gamma-glutamyltransferase
184374	1.27567702105388	2.79324513010211	1.0092737443704	-	-	-	paREP2b
184375	1.48835540428041	3.23307239721361	1.0371236999437	1977	Molybdopterin converting factor, small subunit	H	conserved hypothetical protein
184376	1.39159399671545	2.97949202376974	1.02230433259522	491	Zn-dependent hydrolases, including glyoxylases	R	beta-lactamase-like protein
184377	1.49642694263131	3.33412910674716	1.09198614045024	1489	DNA-binding protein, stimulates sugar fermentation	R	sugar fermentation stimulation protein, conjectural
184378	1.46165995379521	3.09280034128336	1.03755463909792	3342	Uncharacterized conserved protein	S	conserved hypothetical protein
184379	1.4561869511001	3.15122340293049	1.03343520897336	491	Zn-dependent hydrolases, including glyoxylases	R	beta-lactamase-like protein
184380	1.41173829794684	2.99801451646614	1.07005745486017	574	Phosphoenolpyruvate synthase/pyruvate phosphate dikinase	G	pyruvate, phosphate dikinase
184381	1.43916440023432	3.01964616017715	0.981617000564522	-	-	-	hypothetical protein
184382	1.52644554774334	3.46396279104436	1.03999515818686	640	Predicted transcriptional regulators	K	P. aerophilum family 453, possible regulatory protein part 2, authentic frameshift
184383	1.43816332483959	3.5992470296181	1.20806022959009	-	-	-	P. aerophilum family 453, possible regulatory protein part 1, authentic frameshift
184384	1.33540386999404	2.95131762645676	0.990960795661653	-	-	-	hypothetical protein
184385	1.50194978761507	3.29547367761116	1.04952629743198	1192	ATPases involved in chromosome partitioning	D	hypothetical protein
184386	1.6724082896506	3.49629988919899	1.04482604458864	-	-	-	hypothetical protein
184387	1.524105446922	3.40114521061397	1.0682468462054	-	-	-	hypothetical protein
184388	1.49187237435595	3.32819460242523	1.12272101960588	-	-	-	conserved within P. aerophilum
184389	1.52916812453849	3.42486911208829	1.15271201255531	-	-	-	conserved within P. aerophilum
184390	1.5255799419208	3.37733752233368	1.09703186561627	4917	Ethanolamine utilization protein	E	conserved within P. aerophilum
184391	1.37967523920414	3.06940712816015	1.07791789891443	1607	Acyl-CoA hydrolase	I	acyl coenzyme A thioester hydrolase
184392	1.39921413811235	3.0965820266211	1.0653461117132	1701	Uncharacterized protein conserved in archaea	S	conserved hypothetical protein
184393	1.49427190970308	3.34140180489599	1.10311911652065	1829	Predicted archaeal kinase (sugar kinase superfamily)	R	conserved hypothetical protein
184394	1.51016539031945	3.31418258237048	1.10251232337039	1893	Ketopantoate reductase	H	2-dehydropantoate 2-reductase (ketopantoate reductase)
184395	1.47801163509601	3.19604426887321	1.10097037952624	413	Ketopantoate hydroxymethyltransferase	H	3-methyl-2-oxobutanoate hydroxymethyltransferase
184396	1.44438699785843	3.45114921087997	1.18667030127984	1079	Uncharacterized ABC-type transport system, permease component	R	sugar transport permease protein
184397	1.46738677376129	3.55742199560877	1.2104852111542	4603	ABC-type uncharacterized transport system, permease component	R	ribose ABC transporter, permease protein
184398	1.42709856412865	3.12595113414889	1.08488085943144	3845	ABC-type uncharacterized transport systems, ATPase components	R	ribose ABC transport system ATP-binding protein
184399	1.41456191556207	2.98746619688201	1.05915990129196	1744	Uncharacterized ABC-type transport system, periplasmic component/surface lipoprotein	R	conserved hypothetical protein
184400	1.47411182551823	3.21589696772742	1.10408778434803	1892	Uncharacterized protein conserved in archaea	S	conserved hypothetical protein
184401	1.48599100890597	3.2179619327232	1.09632757517188	1236	Predicted exonuclease of the beta-lactamase fold involved in RNA processing	J	conserved hypothetical protein
184402	1.5756315102113	3.73665668954606	1.16365820591416	-	-	-	paREP2b
184403	1.49631333898046	3.26282998455158	1.13306240166666	301	Thiamine biosynthesis ATP pyrophosphatase	H	thiamine biosynthesis protein (thiI), probable
184404	1.39049239414966	2.92527691623209	1.03372269111114	58	Glucan phosphorylase	G	conserved hypothetical protein
184405	1.4713682923493	3.41156514202947	1.13465386570233	1672	Predicted ATPase (AAA+ superfamily)	R	conserved hypothetical protein, degenerate
184406	1.46533006348351	3.14394140750691	1.10056176844862	2414	Aldehyde:ferredoxin oxidoreductase	C	aldehyde ferredoxin oxidoreductase (aor)
184407	1.47741855006962	3.19930286212587	1.10620532212174	1449	Alpha-amylase/alpha-mannosidase	G	conserved hypothetical protein
184408	1.48296527172522	3.14985164630656	1.11034790333499	297	Glycogen synthase	G	glycogen synthase (starch (bacterial glycogen) synthase), putative
184409	1.48111019607189	3.11929071647692	1.05384227753167	1208	Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translati	MJ	glucose-1-phosphate adenylyltransferase
184410	1.45476763708252	3.11386349624431	1.08312139541541	2106	Uncharacterized conserved protein	S	conserved hypothetical protein
184411	1.43725363573523	2.77446866959749	1.01930655509082	-	-	-	hypothetical protein
184412	1.55966188570686	3.62604252172135	1.22732262414655	-	-	-	paREP2b
184413	1.50365703754188	3.62212643681917	1.16928713518213	201	Preprotein translocase subunit SecY	U	preprotein translocase secY subunit
184414	1.6521730040471	3.47193933065473	1.04249975826577	200	Ribosomal protein L15	J	ribosomal protein L15
184415	1.49675888990633	3.26332968285965	1.10275672666439	1940	Transcriptional regulator/sugar kinase	KG	glucokinase (ROK family protein), conjectural
184416	1.47985202657998	3.16585607329323	1.09524649083358	334	Glutamate dehydrogenase/leucine dehydrogenase	E	glutamate dehydrogenase
184417	1.51840251364988	3.30065373689747	1.11458879449276	-	-	-	conserved hypothetical protein part 2, authentic frameshift
184418	1.52272900044766	3.2788746392446	1.01898471790992	121	Predicted glutamine amidotransferase	R	conserved hypothetical protein part 1, authentic frameshift
184419	1.38801098170982	2.96014134425224	1.03689268709272	174	Glutamine synthetase	E	glutamine synthetase
184420	1.52524298923691	3.19425073011508	1.07130281035265	67	Glutamate synthase domain 1	E	glutamate synthase subunit, conjectural
184421	1.59369857960249	3.46490659800607	1.13847603827372	69	Glutamate synthase domain 2	E	glutamate synthase subunit, conjectural
184422	1.60908681418319	3.62918431404573	1.08256891922379	2250	Uncharacterized conserved protein related to C-terminal domain of eukaryotic chaperone, SACSIN	S	conserved within P. aerophilum
184423	1.51991419143241	3.36195420870737	1.12007305038604	75	Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase	E	aminotransferase, class-V
184424	1.48042041609765	3.4264995775758	1.13782212999457	-	-	-	hypothetical protein
184425	1.56411883158764	3.43872463228238	1.09565617822341	-	-	-	hypothetical protein
184426	1.51839750233989	3.13570020352094	1.04282414932821	-	-	-	conserved within P. aerophilum
184427	1.5780956532572	3.52373737658379	1.13115286710552	746	Molybdopterin-guanine dinucleotide biosynthesis protein A	H	molybdopterin-guanine dinucleotide biosynthesis protein A
184428	1.44776973245566	3.19610836106667	1.10883505108161	1449	Alpha-amylase/alpha-mannosidase	G	pullulanase
184429	1.46608329444818	3.23031783079888	1.08624926244291	2182	Maltose-binding periplasmic proteins/domains	G	maltose ABC transporter, maltose binding protein
184430	1.47788256347384	3.50642844333867	1.15813558411269	1175	ABC-type sugar transport systems, permease components	G	maltose ABC transporter, permease protein
184431	1.45894015581115	3.60564263688042	1.19193508052738	3833	ABC-type maltose transport systems, permease component	G	maltose ABC transporter, permease protein
184432	1.37926329467925	2.85337143669202	1.09307754358712	-	-	-	hypothetical protein
184433	1.49182455093893	3.24877642219985	1.07288191125922	-	-	-	hypothetical protein
184434	1.4855918291021	3.38594621264227	1.14094962414178	501	Zn-dependent protease with chaperone function	O	heat shock protein, htpX homolog, conjectural
184435	1.46247402169121	3.19048470920083	1.02472575177621	-	-	-	hypothetical protein
184436	1.44797025503018	3.1660698686179	1.12491002177932	1910	Periplasmic molybdate-binding protein/domain	P	molybdenum cofactor biosynthesis protein (moaA)
184437	1.50621526581879	3.31968888040849	1.13888020758726	303	Molybdopterin biosynthesis enzyme	H	molybdenum cofactor biosynthesis protein (moaA)
184438	1.42421141248329	3.19378931432515	1.11787744656141	-	-	-	hypothetical protein
184439	1.4690801226201	3.2276314376222	1.0559735088979	121	Predicted glutamine amidotransferase	R	conserved hypothetical protein
184440	1.44167291044093	2.9945735289614	1.01878278115235	1522	Transcriptional regulators	K	transcriptional regulatory protein, AsnC family, putative
184441	1.59617575801459	3.44910396226154	1.07970426063913	-	-	-	hypothetical protein
184442	1.48686014381869	3.34269947506756	1.08093546542689	1522	Transcriptional regulators	K	transcriptional regulatory protein, AsnC family, putative
184443	1.47702272381619	3.30151741795912	1.08796518327859	1890	Ribosomal protein S3AE	J	ribosomal protein S3
184444	1.42420138136744	2.96064180965054	0.994389317699051	1094	Predicted RNA-binding protein (contains KH domains)	R	conserved hypothetical protein
184445	1.44577266325965	3.05630169346237	1.05900861922483	1718	Serine/threonine protein kinase involved in cell cycle control	TD	conserved hypothetical protein
184446	1.47667163591179	3.22490884827905	1.0680169766123	1014	Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, gamma subunit	C	indolepyruvate ferredoxin oxidoreductase beta subunit
184447	1.45810411789725	3.22312630021849	1.09487883735213	4231	Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits	C	indolepyruvate ferredoxin oxidoreductase alpha subunit part 2, authentic frameshift
184448	1.51008616197942	3.38661714309123	1.11213942525918	4231	Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits	C	indolepyruvate ferredoxin oxidoreductase alpha subunit part 1, authentic frameshift
184449	1.43005450194563	2.83559822782608	1.01962393977231	1594	DNA-directed RNA polymerase, subunit M/Transcription elongation factor TFIIS	K	transcription associated protein, conjectural
184450	1.38589607749484	3.02479356594341	1.03651255932064	1259	Uncharacterized conserved protein	S	conserved hypothetical protein
184451	1.43221297076084	2.94900613170985	1.02879656923956	-	-	-	hypothetical protein
184452	1.43986072172617	3.09272764525937	1.0758769377644	-	-	-	hypothetical protein
184453	1.46856046611135	3.2686878473836	1.0724255582394	184	Ribosomal protein S15P/S13E	J	ribosomal protein S13
184454	1.40364491918945	3.0449156593091	1.05090996684892	500	SAM-dependent methyltransferases	QR	conserved hypothetical protein
184455	1.50028035893164	3.30350991726959	1.10849195794797	1899	Deoxyhypusine synthase	O	deoxyhypusine synthase
184456	1.45409450584559	3.45913063713727	1.1660987104236	472	UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N-acetylglucosamine-1-phosphate transferase	M	UDP-N-acetylglucosamine--dolichyl-phosphate N-acetylglucosaminephosphotransferase
184457	1.39109252369327	3.4660854971426	1.12907023900184	-	-	-	hypothetical protein
184458	1.41842990884922	3.14721208018045	1.0643128508879	1159	GTPase	R	conserved within P. aerophilum
184459	1.44900383794556	3.22145507648225	1.11005567829249	-	-	-	conserved within P. aerophilum
184460	1.43773901096322	3.21533133866758	1.10889024462456	561	Predicted hydrolases of the HAD superfamily	R	conserved hypothetical protein
184461	1.36463277076365	3.1079854438102	1.038998044497	-	-	-	hypothetical protein
184462	1.42351332394083	3.03867612048104	1.08497053483561	491	Zn-dependent hydrolases, including glyoxylases	R	hypothetical protein
184463	1.36504411248757	3.02612429232862	1.08671065003829	1833	Uncharacterized conserved protein	S	conserved hypothetical protein
184464	1.5205207315367	3.34795612207691	1.14062266259251	846	NAD-dependent protein deacetylases, SIR2 family	K	conserved hypothetical protein
184465	1.43389540122212	2.68693947347708	1.17985881299926	-	-	-	hypothetical protein
184466	1.51462760826951	3.26200892726383	1.0638382552239	-	-	-	hypothetical protein
184467	1.5947762615949	3.69616345809924	1.17893189093364	-	-	-	hypothetical protein
184468	1.49870890037843	3.61778513722352	1.15064026079671	-	-	-	conserved hypothetical protein
184469	1.847168516418	4.22151984649641	1.10999427356442	-	-	-	hypothetical protein
184470	1.39545273022194	3.17405707973233	1.12770476934726	1750	Archaeal serine proteases	R	conserved hypothetical protein
184471	1.50320666092763	3.53217881705976	1.15610229281355	-	-	-	hypothetical protein
184472	1.4174712540176	2.95451681626869	1.0463351174112	-	-	-	hypothetical protein
184473	1.38770140284631	3.04717287001991	1.03142594376358	1961	Site-specific recombinases, DNA invertase Pin homologs	L	resolvase, conjectural
184474	1.4176674944285	3.08249005607133	1.05848158376204	2236	Predicted phosphoribosyltransferases	R	xanthine-guanine phosphoribosyltransferase, conjectural
184475	1.58701186719735	3.4609113283227	1.01726481391506	-	-	-	conserved within P. aerophilum
184476	1.49140469640212	3.17972050570518	0.976167400300956	-	-	-	hypothetical protein
184477	1.39248457682115	3.03833422923554	1.07130444387009	504	CTP synthase (UTP-ammonia lyase)	F	CTP synthase (pyrG)
184478	1.50244883088473	3.54171210006559	1.12040139271239	838	NADH:ubiquinone oxidoreductase subunit 3 (chain A)	C	NADH-ubiquinone oxidoreductase subunit
184479	1.4467350414339	3.5855523757117	1.21167851241218	697	Permeases of the drug/metabolite transporter (DMT) superfamily	GER	conserved within P. aerophilum
184480	1.53647779964997	3.34008668874027	1.13019684534194	496	Predicted acid phosphatase	R	surE stationary-phase survival protein homolog
184481	1.46778230135575	3.18204471009756	1.03663925091035	-	-	-	hypothetical protein
184482	1.41772078150664	3.15486424434185	1.09441066548537	1199	Rad3-related DNA helicases	KL	hypothetical protein
184483	1.44128481344753	3.27796661449771	1.0477743824096	433	Predicted ATPase	R	conserved hypothetical protein
184484	1.47193286176933	3.17459942618484	1.05234855498725	675	Transposase and inactivated derivatives	L	paREP12, internal deletion
184485	1.2970718183853	2.93872128948843	0.8081865749592	-	-	-	hypothetical protein
184486	1.40499548213254	3.15173447229528	0.989824079760755	-	-	-	hypothetical protein
184487	1.36718743454635	2.99876278752084	0.892043354411245	-	-	-	hypothetical protein
184488	1.27744635036126	2.83953704150707	0.894982528741699	-	-	-	hypothetical protein
184489	1.26778724156323	2.9118022106858	0.816672394723287	-	-	-	hypothetical protein
184490	1.36235460742262	3.09465726012286	1.07402231735209	-	-	-	hypothetical protein
184491	1.47307340108228	3.29848291425085	1.03419559033303	-	-	-	hypothetical protein
184492	1.41415737074277	3.08096671746704	1.06379872828273	-	-	-	paREP2b
184493	1.4972811863166	3.32316168948664	1.14307457631235	-	-	-	paREP2b
184494	1.38625895477081	3.08941082984275	1.00771078516183	-	-	-	hypothetical protein
184495	1.37365494742244	3.11634424294554	1.063987798341	501	Zn-dependent protease with chaperone function	O	heat shock protein, htpX homolog, conjectural
184496	1.47456464965935	3.18723428410932	1.00226311827497	-	-	-	hypothetical protein
184497	1.44609753637463	3.34221630471136	1.07323173065812	-	-	-	hypothetical protein
184498	1.43949793847911	3.14524139686411	1.07517731552899	434	Predicted TIM-barrel enzyme	R	conserved hypothetical protein
184499	1.41725813531097	2.96131985634857	1.04086035597186	1208	Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translati	MJ	mannose-1-phosphate guanyltransferase
184500	1.30952787748841	2.89360424662848	1.02469570248604	-	-	-	hypothetical protein
184501	1.40619108540564	3.12828869208281	1.10336151437781	-	-	-	hypothetical protein
184502	1.38754387107819	2.95859555955436	0.996783978556102	537	Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases	FGR	HIT family protein
184503	1.40562108784257	3.11797158961496	1.0929541726701	-	-	-	hypothetical protein
184504	1.38760158606235	3.1712039607231	1.10246357527392	1412	Uncharacterized proteins of PilT N-term./Vapc superfamily	R	conserved hypothetical protein
184505	1.45284545857404	3.1378390141874	1.05903285970011	1095	DNA-directed RNA polymerase, subunit E'	K	DNA-directed RNA polymerase subunit E' (rpoE1)
184506	1.34789752815607	2.87990222579936	1.02716482932465	2093	DNA-directed RNA polymerase, subunit E''	K	DNA-directed RNA polymerase subunit E'' (rpoE2)
184507	1.47736191088806	3.32313965360118	1.09544767622421	-	-	-	hypothetical protein
184508	1.38835770892162	2.95656124362796	1.05852554481882	13	Alanyl-tRNA synthetase	J	alanyl-tRNA synthetase
184509	1.34877902129099	2.96639715292414	1.01691330862224	1308	Transcription factor homologous to NACalpha-BTF3	K	conserved hypothetical protein
184510	1.37024759953126	2.94717344706868	1.02583343977152	197	Ribosomal protein L16/L10E	J	ribosomal protein L10
184511	1.43620785518264	3.1820421317818	1.08561769459918	4879	Uncharacterized protein conserved in archaea	S	conserved hypothetical protein
184512	1.44647160884003	3.25586647515036	1.09889500356067	725	ABC-type molybdate transport system, periplasmic component	P	hypothetical protein
184513	1.42624704193613	3.57447918997247	1.19606906895088	555	ABC-type sulfate transport system, permease component	O	sulfate ABC transporter, permease protein, putative
184514	1.39816882657213	3.11720277829473	1.03038559237226	3839	ABC-type sugar transport systems, ATPase components	G	ABC transporter ATP-binding protein, putative
184515	1.41425584983086	3.17307795082597	1.0830479117308	1506	Dipeptidyl aminopeptidases/acylaminoacyl-peptidases	E	conserved hypothetical protein
184516	1.37612861951411	3.00780790142084	1.0297151413762	1938	Archaeal enzymes of ATP-grasp superfamily	R	conserved hypothetical protein
184517	1.40667640405059	3.03893194171809	1.00532408156112	94	Ribosomal protein L5	J	ribosomal protein L5
184518	1.42619694460662	3.1292321644089	1.08528885979574	622	Predicted phosphoesterase	R	conserved hypothetical protein
184519	1.37853337953144	3.1382041275828	1.10461362934773	144	tRNA and rRNA cytosine-C5-methylases	J	sun family protein
184520	1.47485689244467	3.3446904767764	1.13533205092043	2407	L-fucose isomerase and related proteins	G	conserved hypothetical protein
184521	1.42538397674525	3.24633841068387	1.10564204241462	2848	Uncharacterized conserved protein	S	conserved hypothetical protein
184522	1.47502673279401	3.17675492148165	1.06258807813966	3830	ACT domain-containing protein	T	conserved hypothetical protein
184523	1.34206767347997	2.9274878897878	1.02200401348927	372	Citrate synthase	C	citrate synthase part 1, authentic frameshift
184524	1.50361715867453	3.35532301689477	1.05370899043632	372	Citrate synthase	C	citrate synthase part 2, authentic frameshift
184525	1.37640850393277	3.02155316636368	1.06622564656525	2086	Electron transfer flavoprotein, beta subunit	C	electron transfer flavoprotein beta subunit (etfB)
184526	1.42881689848492	3.1432513127159	1.11000923823334	2025	Electron transfer flavoprotein, alpha subunit	C	electron transfer flavoprotein alpha subunit (etfA)
184527	1.46886903889218	3.3205989793659	1.10746797959324	517	FOG: CBS domain	R	conserved protein with 2 CBS domains
184528	1.41515046745199	3.0047455422348	1.03870085531773	365	Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases	I	acetyl-coenzyme A synthetase, degenerate
184529	1.33820160034681	2.95328139251074	1.02750082238985	638	20S proteasome, alpha and beta subunits	O	proteasome, beta subunit
184530	1.48685160403189	3.27184758701011	1.13157489355673	430	RNA 3'-terminal phosphate cyclase	A	RNA 3'-terminal phosphate cyclase
184531	1.43918144193475	3.44426887735641	1.14427816384572	109	Polyprenyltransferase (cytochrome oxidase assembly factor)	O	cytochrome C oxidase assembly factor
184532	1.42715603154876	3.1502734098257	1.03631245441607	-	-	-	nitrite reductase (cytochrome C), conjectural
184533	1.38101707856838	2.94919994615755	1.03086983951244	-	-	-	nitrite reductase (cytochrome d1), conjectural
184534	1.40753306558749	3.00837511873406	0.999366438990718	7	Uroporphyrinogen-III methylase	H	uroporphyrin-III C-methyltransferase
184535	1.38222650146137	3.38474411274797	1.18154644892445	-	-	-	conserved hypothetical protein
184536	1.35108612172118	3.1619009506721	1.13269760045006	3256	Nitric oxide reductase large subunit	P	nitric oxide reductase, cytochrome b subunit
184537	1.41950781001788	3.26134171967477	1.05820666879583	-	-	-	conserved within P. aerophilum
184538	1.51709517254063	3.47505173754689	1.10450757632711	-	-	-	conserved within P. aerophilum
184539	1.4291584576136	3.59987870941082	1.19427944843262	-	-	-	hypothetical protein
184540	1.3685749793222	3.27145597562104	1.14711303014057	-	-	-	hypothetical protein
184541	1.34143874184969	3.13236327614798	1.03960104473877	-	-	-	hypothetical protein
184542	1.36385713174714	2.91874589635005	1.00228152887198	2180	Nitrate reductase delta subunit	C	nitrate reductase delta subunit (narJ)
184543	1.36728558096959	2.96371931897138	1.06662611797531	5013	Nitrate reductase alpha subunit	C	nitrate reductase alpha subunit (narG)
184544	1.30244411981708	2.75644825034022	0.972883561001925	1140	Nitrate reductase beta subunit	C	nitrate reductase beta subunit (narH)
184545	1.38054072501777	3.22241077021343	1.10871091553362	-	-	-	nitrate reductase subunit, conjectural
184546	1.39384197637823	3.55206028060516	1.1892221148007	-	-	-	hypothetical protein
184547	1.52776084955296	3.23162822083371	1.08952597155141	-	-	-	hypothetical protein
184548	1.38257529338575	3.47555390720117	1.18023124265647	-	-	-	conserved hypothetical protein
184549	1.34200115868711	3.50003867795836	1.11405600299121	-	-	-	hypothetical protein
184550	1.35121295737828	3.02910402077846	1.02981197427788	1131	ABC-type multidrug transport system, ATPase component	V	nitrate ABC transport, ATP-binding protein, putative
184551	1.40806451974617	3.50227928440188	1.18142809355649	755	ABC-type transport system involved in cytochrome c biogenesis, permease component	O	transport protein, putative
184552	1.39169612596101	3.17310545332728	1.09277767352398	-	-	-	hypothetical protein
184553	1.40614708452113	3.36051048902223	1.16462164449308	1138	Cytochrome c biogenesis factor	O	cytochrome C-type biogenesis protein, probable
184554	1.4357662551261	3.47946069738982	1.1602453987948	-	-	-	hypothetical protein
184555	1.40679789249926	3.10821032190247	1.08453489361991	1084	Predicted GTPase	R	conserved hypothetical protein
184556	1.40274926324916	3.05725358305619	1.03508829184724	1912	Uncharacterized conserved protein	S	conserved hypothetical protein
184557	1.39787278340496	3.03938347112241	1.12138588220117	-	-	-	conserved within P. aerophilum
184558	1.46035121041308	3.32890834533087	1.13596427282942	-	-	-	hypothetical protein
184559	1.43115958586796	3.10377429888137	1.07868384137314	451	Nucleoside-diphosphate-sugar epimerases	MG	NAD dependent epimerase/dehydratase, putative
184560	1.59036400956089	3.37845213020139	1.06630655184351	-	-	-	hypothetical protein
184561	1.52414676867204	3.34175050920055	1.04499362457871	-	-	-	conserved within P. aerophilum
184562	1.3026599317119	2.84557183382057	0.94580874618191	-	-	-	conserved hypothetical protein
184563	1.43910144511942	3.40429596824627	1.14597209060337	428	Predicted divalent heavy-metal cations transporter	P	conserved protein (gufA)
184564	1.33823147176606	2.89593806541318	1.02510445802236	4260	Putative virion core protein (lumpy skin disease virus)	S	conserved hypothetical protein
184565	1.47728727933398	3.56647194203519	1.16925145394438	-	-	-	hypothetical protein
184566	1.43252489255447	3.22988604621176	1.11169149322781	4034	Uncharacterized protein conserved in archaea	S	conserved hypothetical protein
184567	1.42544788778625	3.2825259060161	1.11330520796426	-	-	-	conserved within P. aerophilum
184568	1.41112556562988	3.16643186289068	1.06153184092617	-	-	-	hypothetical protein
184569	1.3462318322849	3.0726428817746	1.093605450285	-	-	-	hypothetical protein
184570	1.3571415020553	2.96316455015629	1.01953344370344	436	Aspartate/tyrosine/aromatic aminotransferase	E	aminotransferase, putative
184571	1.40018980269261	3.0662811239786	1.04819415131705	37	Predicted ATPase of the PP-loop superfamily implicated in cell cycle control	D	conserved hypothetical protein
184572	1.32195033042178	2.9659365597772	1.02303790669699	1859	RNA:NAD 2'-phosphotransferase	J	conserved hypothetical protein
184573	1.41592074169999	3.38108042175686	1.1490683695758	2512	Uncharacterized membrane-associated protein/domain	S	conserved protein
184574	1.46650870537158	3.26195657027115	1.08822767041957	-	-	-	paREP8
184575	1.37081675893349	2.91418176840883	1.03736550677519	620	Methionine synthase II (cobalamin-independent)	E	5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase
184576	1.38613926930216	3.00240698040248	1.03925788203842	183	Acetyl-CoA acetyltransferase	I	acetyl-CoA C-acyltransferase
184577	1.36618333958752	3.06864070759487	1.09713029304683	1840	ABC-type Fe3+ transport system, periplasmic component	P	conserved protein
184578	1.47737514666656	3.23351880078945	1.11939385379949	-	-	-	paREP8
184579	1.50073293878769	3.37085674473851	1.05561762790893	3432	Predicted transcriptional regulator	K	conserved hypothetical protein
184580	1.35223331867121	3.41720317834263	1.15479833120302	-	-	-	hypothetical protein
184581	1.39245399591938	3.33705161147844	1.17688216396405	577	ABC-type antimicrobial peptide transport system, permease component	V	conserved hypothetical protein
184582	1.40079729478348	3.30890269639009	1.15515738840315	-	-	-	conserved hypothetical protein
184583	1.35187478142478	2.87767814143609	1.01987889521241	-	-	-	conserved within P. aerophilum
184584	1.45772604963834	3.62936747064068	1.19699324677062	-	-	-	hypothetical protein
184585	1.38057462594161	3.2994925355299	1.12816226733698	-	-	-	hypothetical protein
184586	1.41216772514528	3.00366643541951	1.03706903845272	1180	Pyruvate-formate lyase-activating enzyme	O	pyruvate formate-lyase activating enzyme homolog
184587	1.50646910715354	3.45989473023523	1.12823443174831	-	-	-	paREP1
184588	1.47163114341548	3.0774249963907	1.10650931933207	-	-	-	carbonic anhydrase part 2, authentic frameshift
184589	1.43848355107904	3.32784651338973	1.11523035598384	288	Carbonic anhydrase	P	carbonic anhydrase part 1, authentic frameshift
184590	1.38609087715028	3.11621572508397	1.11052730818395	616	Periplasmic serine proteases (ClpP class)	OU	protease IV, conjectural
184591	1.4594029705431	3.17488508842057	1.11304594626059	2248	Predicted hydrolase (metallo-beta-lactamase superfamily)	R	conserved hypothetical protein
184592	1.36685992220054	3.2907405955166	1.15189054389103	-	-	-	hypothetical protein
184593	1.36847850721042	3.33217451899666	1.14232079084003	3366	Uncharacterized protein conserved in archaea	S	hypothetical protein
184594	1.404465296854	3.30817470558509	1.14399544297485	577	ABC-type antimicrobial peptide transport system, permease component	V	conserved hypothetical protein
184595	1.62417384943851	3.66861830547642	1.13845611496504	-	-	-	hypothetical protein
184596	1.38725032834924	3.16139339341529	1.08809299415617	1401	GTPase subunit of restriction endonuclease	V	hypothetical protein
184597	1.5057919675914	3.34186490121512	1.14611902626272	-	-	-	hypothetical protein
184598	1.44839594576091	3.25234538430471	1.08936579105006	-	-	-	hypothetical protein